BAC Information

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BAC

Clone NameMSMg01-330F03
Chromosome19 (Build37)
Map Location 14,768,960 - 14,769,251
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505, EG667433, Tle4
Downstream geneEG433225, EG635497, Pomc-ps1, LOC667482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330F03.T7 (MSMg01no330_f03.b1)MSMg01-330F03.TJ (MSMg01no330_f03.g1)
ACCAG446910AG446911
length741757
length of high quality
(start - end)
319 (23 - 341)294 (77 - 370)
definitionCHROMAT_FILE: MSMg01no330_f03.b1 PHD_FILE: MSMg01no330_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:00 2005CHROMAT_FILE: MSMg01no330_f03.g1 PHD_FILE: MSMg01no330_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCCCTGAGGAATACCGA
ATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGAAAATCAAAACAACCCTGAGATTCCACCTCACAGCAGTCAGAATGG
CTAATATCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAA
AGAGGAACACTCCTCCATCGTTGGTGGGATTGCAAGCTTGAACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATGTATCCAGAAGATGTTCATACT
GTTCCCCCCCCCCACCTGCTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCAGGAAAAAACCCAGATGCCTCTCAATAGAGTAATGGATA
CAGAAAATGTGGTATATTTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTAGGCAAATGGATGAACCTGGAGGGCATCA
TCCTGAGCGAGGTAACCCAATCACAAAAGAACTCACATGATATGTACTCA
CTGATAAGTGGATATTAGCCCATAAACTTAGAATACCCCCGATATGAGAT
ACAATTTTGCGAAACACATGAAACTCCAGAAGAACGAAGACCAAAGTGTG
CACACTTTGTCCCTTCTTAGAATTGGTCACAAAACACCCCG
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAATAATGAATGTTTCTCATTAA
AAATTAATGAATGAGTGCCTTATATTGACCGAAGTGTGTGAAATACCCTA
ATTTTCTTGTTTAAAAGAATTAATATTCATACATATTAGGTCCAAATTAC
CACCATTTAGGTGGCTACTTAGTGTTACAGATTACAGATCCGTTTATTAC
CATACAAGCAGACTATATTTGCTAGCATGCCTAGATTGTGCTATGATAAA
CAAATGTCGAGCTCTCCATGCCTTCTTTTTATATGTAGAGTCATCCTCAG
AGCAGCTCTTCCCCACCATTTTTTCTTCACCCACGCTCCTTCCACCTAAG
GCTTCTACCAGCTCAGCTCATGGGATTACCAGGACACAAGAAAGGCAGAA
AACTGTCTATCAGCTTTCAAAAGTTTCAGCCTAAGTTGACACATACATAA
GTACTTATAACCCAGGGCCAGATAGTCTGGCTGATGCAGGGAACCAGACG
CGAACTGTGACTAATAAGTCATCTACAACAGAAATACTAAAATCAAAGAA
CAATATTGGGTTTTGGTTTGGTTTGGTTTGGTTTGGTTCGGGTTTTGGTA
TTTCGAGACAGGGTTTCTCTGTACAGCCCTGACTGTCCTGGAACTCACTT
TGTATACCAAGCTGGCCTCGAACTCAGAAGTCCATCTGCCTTCTGCTCCT
AATGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_f03.g1 MSMg01no330_f03.g1 CHROMAT_FILE:
MSMg01no330_f03.g1 PHD_FILE: MSMg01no330_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:00 2005
         (294 letters)



>mm_chr19_14768760_14769453
          Length = 694

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataataatgaatgtttctcattaaaaattaatgaatgagtgccttatattgaccgaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 492 ataataatgaatgtttctcattaaaaattaatgaatgagtgccttatattgaaggaagtg 433

                                                                       
Query: 61  tgtgaaataccctaattttcttgtttaaaagaattaatattcatacatattaggtccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgtgaaataccctaattttcttgtttaaaagaattaatattcatacatattaggtccaaa 373

                                                                       
Query: 121 ttaccaccatttaggtggctacttagtgttacagattacagatccgtttattaccataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttaccaccatttaggtggctacttagtgttacagattacagatccgtttattaccataca 313

                                                                       
Query: 181 agcagactatatttgctagcatgcctagattgtgctatgataaacaaatgtcgagctctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agcagactatatttgctagcatgcctagattgtgctatgataaacaaatgtcgagctctc 253

                                                               
Query: 241 catgccttctttttatatgtagagtcatcctcagagcagctcttccccacca 292
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 252 catgccttctttttagatgtagagtcatcctcagagcagctcttccccacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)