Query= MSMg01no330_f12.b1 MSMg01no330_f12.b1 CHROMAT_FILE:
MSMg01no330_f12.b1 PHD_FILE: MSMg01no330_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:02 2005
(308 letters)
>mm_chr19_18883924_18884630
Length = 707
Score = 549 bits (284), Expect = e-161
Identities = 299/304 (98%), Gaps = 1/304 (0%)
Strand = Plus / Plus
Query: 5 gaattctctactacaacctctacagaaaacataaggtaaggcaaatctttggaaagtact 64
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattctctacaacaacctctacagaaaacacaaggtaaggcaaatctttggaaagtact 264
Query: 65 ccaatgagaggcccaggaattgcgaatcacggttttaggaaaatggctgatggagtccca 124
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaatgagagggcaaggaattgcgaatcacggttttaggaaaatggctgatggagtccca 324
Query: 125 ggggcagtagcttctgtaatgggccttctacttgaggacatatgtctcctgatgtacata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggggcagtagcttctgtaatgggccttctacttgaggacatatgtctcctgatgtacata 384
Query: 185 gagtactgtgctaatgtttttcatgctggcatgaaatgaataaaaaaacttttccaagaa 244
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 gagtactgtgctaatgtttttcatgctggcatgaaatgaataaaaaa-cttttccaagaa 443
Query: 245 atatattgattgaataaattactcacaatataaagcaggatgttgtatgtgctatattgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atatattgattgaataaattactcacaatataaagcaggatgttgtatgtgctatattgt 503
Query: 305 cata 308
||||
Sbjct: 504 cata 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 707
Length adjustment: 9
Effective length of query: 299
Effective length of database: 698
Effective search space: 208702
Effective search space used: 208702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no330_f12.g1 MSMg01no330_f12.g1 CHROMAT_FILE:
MSMg01no330_f12.g1 PHD_FILE: MSMg01no330_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:02 2005
(288 letters)
>mm_chr19_19054446_19055133
Length = 688
Score = 518 bits (268), Expect = e-151
Identities = 283/288 (98%)
Strand = Plus / Minus
Query: 1 caaaatgtagtcactttaagatgcttaattctagatattccaattgctccgtcacctgac 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 488 caaaatgtagtcactttaagatgcttaattctagatattccaattgctcagtcacctgac 429
Query: 61 aagtcaaccttgtacaaaagatgtacatttttctgttacgtcttcagatgattacagcgg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 428 aagtcaaccttgtacaaaagatgtacatttttctgttacgtcttcagatgattacagcag 369
Query: 121 agcccttggcaacgtgcttttccaacatcgttagctctaattacaaggcctatggttaac 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agcccttggcaatgtgcttttccaacatcgttagctctaattacaaggcctatggttaac 309
Query: 181 agcacatgtctgcatgctttagcagcaggtcagcctgtgaccctgctgatagtcgatggc 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agcacatgtctgcatgctttggcagcaggtcagcctgtgaccctgctgatagtcgatggc 249
Query: 241 cttgtcctggtgatggaagaggcctgaatcagcttcatacagcctatt 288
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cttgccctggtgatggaagaggcctgaatcagcttcatacagcctatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
