BAC Information

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BAC

Clone NameMSMg01-330G15
Chromosome19 (Build37)
Map Location 16,604,900 - 16,764,930
singlet/doubletdoublet
Overlap geneGna14, Vps13a
Upstream geneLOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, LOC666665
Downstream geneFoxb2, A230083H22Rik, Gcnt1, Rfk, Pcsk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330G15.T7 (MSMg01no330_g15.b1)MSMg01-330G15.TJ (MSMg01no330_g15.g1)
ACCAG446979AG446980
length756757
length of high quality
(start - end)
322 (41 - 362)194 (125 - 318)
definitionCHROMAT_FILE: MSMg01no330_g15.b1 PHD_FILE: MSMg01no330_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:07 2005CHROMAT_FILE: MSMg01no330_g15.g1 PHD_FILE: MSMg01no330_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,764,613 - 16,764,930)(16,604,900 - 16,605,093)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTGGAGACTACAAGTACAAGGTATGTGATTGCTCATTTTTTTCAAAATAA
CATTAACCAGAGTATTAGAACGCAAGTGTTGCAGCATACGACCTGAGGTA
ATAGCCATAGTATAAAAGAGTCAAACACCAGGGATGGAGAAGGGAGATGA
AACGAAGAATGATGCTTCAGTTCAGAAGTTCCTTCCAGTCCCAGTACGCT
AATTTTTAGTGGTAGAGATGCCTCAGAGAATGGAAGAAAAGTTTGAAAGA
AGTAACTTAGTTCAGCCTGCCACACTTACGAAGCTTGCTCAGCCATAGAG
AACACATGATTTCTTTTAGCTGCCGAACTCAGACTCAGAGGTAAACTCAA
TTTACTGAAATGTTACGCCTTAATAGGTAAGGCTTTTAAAATTTTAGAGA
AAAACAGTCTGCCTATGAGAAGCTTATAAAGAGCAATCAAAAGAACATTG
GTTTTTGCTGCTGCTGCTCTTTCAGTTAATGTGGTAAAGTAGGACTGCTG
AGTGATAAGAGACAGTGAAACTATTTCAGATTTCAACAAGCGGACTTTGA
AGCTAGGATTCTGTACTTGATCAAATATTTACTCCCANATTTGAAAACAA
AATTAATTCTATTGTAGTAAGTCACAGTTTATTCAAATCCTTTCAAATCC
TCTTCTAAAGAAATTATTTCTAAATATATCCCAGCAAGAATAATGAGACT
CATGAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCCGAAAATCCTGGGAACAGAGAGCTAATCTGCCTTAGG
ACTTTGGGTCAAGCATTGATCCCAACATTTAGGAGAGGGCGTTGGTCCTC
TGCTCAGTTTTCATGCAGTTCTTTGAGTAGATCTAGGAAAACCTAGTTAA
TATGAGAGCCGAGTCACAGGAAGAAACACAGTAAAGTTAACTCCCCATGT
GCTTACTTCTTCATGGGGAACATCACAAGAGTGTGCTGAGCCCAGCAGGA
CCTGAGCAGGATGTATCTGTTTTTTTTTTGGCTTGTCTGGGCTTTATCCA
GTGAATGGTTTGACTGATTTCCNAATACTNNACCCTCCAGTACCACCAAG
TCCTTTGGTTTCTGAGCCAGATCTTAAAAGATAAAGAAGCTTGTTAGTGG
AGTCCAGGTGAATCAATTTCAGGCCTTTCTCTTGGTACCTATGTGTAGTG
CAGACTTTACATAGGCAATCTGAATCCCCCGGGTTCTCATCTCTGTACTG
CAGAGAACAGCACTTATTTCAGAGTGGTTCTGAAGACTAAAGGGGGCGAC
TCGGGTAGATTCCTCCGCATAGCGACTACTTTAATATTTCTTGGTATCAG
CATCCAATTGTTTTGTTGTAAAGGCCGTTGAATATCTGCACGAGGCTCCT
TCTAGGGCCTTCCCTTACTTACCTATGTGATCCGAAGTTTCTTGATCCAC
ATGGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_g15.b1 MSMg01no330_g15.b1 CHROMAT_FILE:
MSMg01no330_g15.b1 PHD_FILE: MSMg01no330_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:07 2005
         (322 letters)



>mm_chr19_16764409_16765130
          Length = 722

 Score =  592 bits (306), Expect = e-173
 Identities = 315/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttggagactacaagtacaaggtatgtgattgctcatttttttcaaaataacatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaattcttggagactacaagtacaaggtatgtgattgctcatttttttcaaaataacatt 463

                                                                       
Query: 65  aaccagagtattagaacgcaagtgttgcagcatacgacctgaggtaatagccatagtata 124
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 462 aaccagagtattagaatgtaagtgttgcagcatacgacctgaggtaatagccatagtgta 403

                                                                       
Query: 125 aaagagtcaaacaccagggatggagaagggagatgaaacgaagaatgatgcttcagttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aaagagtcaaacaccagggatggagaagggagatgaaacgaagaatgatgcttcagttca 343

                                                                       
Query: 185 gaagttccttccagtcccagtacgctaatttttagtggtagagatgcctcagagaatgga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gaagttccttccagtcccagtacgctaatttttagtggtagagatgcctcagagaatgga 283

                                                                       
Query: 245 agaaaagtttgaaagaagtaacttagttcagcctgccacacttacgaagcttgctcagcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agaaaagtttgaaagaagtaacttagttcagcctgccacacttacgaagcttgctcagcc 223

                             
Query: 305 atagagaacacatgattt 322
           ||||||||||||||||||
Sbjct: 222 atagagaacacatgattt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no330_g15.g1 MSMg01no330_g15.g1 CHROMAT_FILE:
MSMg01no330_g15.g1 PHD_FILE: MSMg01no330_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:07 2005
         (194 letters)



>mm_chr19_16604700_16605293
          Length = 594

 Score =  352 bits (182), Expect = e-102
 Identities = 191/194 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatttaggagagggcgttggtcctctgctcagttttcatgcagttctttgagtagatct 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatttaggagagggagttggtcctctgctcagttttcatgcagttctttgagtagatct 260

                                                                       
Query: 61  aggaaaacctagttaatatgagagccgagtcacaggaagaaacacagtaaagttaactcc 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaaaacctagttaatatgagagctgagtcacaggaagaaacacagtaaagttaactcc 320

                                                                       
Query: 121 ccatgtgcttacttcttcatggggaacatcacaagagtgtgctgagcccagcaggacctg 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatgtgctgacttcttcatggggaacatcacaagagtgtgctgagcccagcaggacctg 380

                         
Query: 181 agcaggatgtatct 194
           ||||||||||||||
Sbjct: 381 agcaggatgtatct 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)