Query= MSMg01no333_n19.b1 MSMg01no333_n19.b1 CHROMAT_FILE:
MSMg01no333_n19.b1 PHD_FILE: MSMg01no333_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:08 2005
(674 letters)
>mm_chr19_44311007_44312080
Length = 1074
Score = 841 bits (435), Expect = 0.0
Identities = 474/487 (97%)
Strand = Plus / Plus
Query: 6 gaattcaactgagtctacaacctctgggagattttagcataataccgaagataccataaa 65
|||||||||| |||| | ||||||||||||||||||| ||||||||||||||| ||| ||
Sbjct: 206 gaattcaactaagtccataacctctgggagattttagtataataccgaagatatcatgaa 265
Query: 66 ggaaagcaaaatactgtctgtactgtgagaggcaggaagggccagagatcactcagggag 125
||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||
Sbjct: 266 ggaaagcaaaatactgtctgtactgcgagaggcagaaagggccagagatcattcagggag 325
Query: 126 aacaagaaaggctaatgaaaatgcagcatcagaaacaatggaaagatctgtgtgaagacc 185
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 326 aacaagaaaggctaatgaaaatgcagcatcagaaacaatggaaagatctgtgtgcagacc 385
Query: 186 aaaaataggaaagtggattaaagcttcatgcaggatccagaagcagtctgtccccttgac 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaaaataggaaagtggattaaagcttcatgcaggatccagaagcagtctgtccccttgac 445
Query: 246 ctacaaaagaaatgagaggaaaagaaggtaacacagaccgatgtcaccggcagtgcctga 305
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 446 ctacaaaagaaatgagaggaaaagaaggtaacacagacagatgtcaccggcagtgcctga 505
Query: 306 gctacagatagaatcaaagtggttgacaaggaagagtttatttctccaacaacgggtgct 365
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 506 gctacagatagaatcaaagtggttgaaaaggaagagtttatttctccaacaacgggtgct 565
Query: 366 accaaaacagagccctgctttcaaaaggccaatgtcaggtcaggcgaagaaggtatgcag 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 accaaaacagagccctgctttcaaaaggccaatgtcaggtcaggcgaagaaggtatgcag 625
Query: 426 cccgagaggtaaggaagaacacaggttaacaagtggagaatgttgtgttttataaaaaga 485
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cccgtgaggtaaggaagaacacaggttaacaagtggagaatgttgtgttttataaaaaga 685
Query: 486 taaagag 492
|||||||
Sbjct: 686 taaagag 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_n19.g1 MSMg01no333_n19.g1 CHROMAT_FILE:
MSMg01no333_n19.g1 PHD_FILE: MSMg01no333_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:08 2005
(673 letters)
>mm_chr19_44327641_44328713
Length = 1073
Score = 1203 bits (622), Expect = 0.0
Identities = 661/674 (98%), Gaps = 2/674 (0%)
Strand = Plus / Minus
Query: 1 agcataaccttggctttgagatgtcatcctcgcttcctgtgccggcacctgaggcttgcc 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 873 agcataaccttggctttgagatgtcatccttgcttcctgtgccggcacctgaggcttgcc 814
Query: 61 aaacacggtttggtcaagaattgagctgaatgaggcctacaaggagggcccaagtgggaa 120
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 813 aaacacggtttggtcaagaactgaactgaatgaggcctacaaggagggcccaagtgggaa 754
Query: 121 gggaactagcaggggcagaaactatttgaagacttcccttctagggaagagggaagagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gggaactagcaggggcagaaactatttgaagacttcccttctagggaagagggaagagga 694
Query: 181 gaatccatagtctataggggaatgtatgcaggctctgggttcattatcctgcagctcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gaatccatagtctataggggaatgtatgcaggctctgggttcattatcctgcagctcatg 634
Query: 241 tttgcggttctcagtggaagaagagagctacccagttgcttcaacgtgatgactgtctct 300
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 633 tttgcggttctcagtggaagaagagagccacccagttgcttcaacgggatgactgtctct 574
Query: 301 gacctactgctaagccaccctgctctctgtgggagtgggatgccatgcgaaagaagaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gacctactgctaagccaccctgctctctgtgggagtgggatgccatgcgaaagaagaaca 514
Query: 361 agatatttccaacctgagaataggccacactggggcaggatcttgaggcaggaaatgttc 420
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 513 agatatatccaacctgagaataggtcacactggggcaggatcttgaggcaggaaatgttc 454
Query: 421 ccgttgcatttccctgaaggcacttgaaaaacttccaagatgaagttccagagcccagac 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ctgttgcatttccctgaaggcacttgaaaaacttccaagatgaagttccagagcccagac 394
Query: 481 ctgaggttgggctgctcaaggtgtataatgtctgccaaagaactgtgtgttgggga-tcg 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 393 ctgaggttgggctgctcaaggtgtataatgtctgccaaagaactgtgtgttggggact-g 335
Query: 540 agaagacgagcaaagtgcctataacacttggaagggatgaagcagcaggctggatggggg 599
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 334 cgaagacgagcaaagtgcctataacacttggaagggacgaagcagcaggctggatggggt 275
Query: 600 ttggaacatgagacacttctgcaatctgattcggtccaagaacatcttgatcagtatgtg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttggaacatgagacacttctgcaatctgattcggtccaagaacatcttgatcagtatgtg 215
Query: 660 ctgcaccctggaga 673
||||||||||||||
Sbjct: 214 ctgcaccctggaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
