BAC Information

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BAC

Clone NameMSMg01-334O07
Chromosome19 (Build37)
Map Location 19,107,168 - 19,107,726
singlet/doubletsinglet
Overlap geneRorb
Upstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6
Downstream geneLOC100042218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334O07.T7 (MSMg01no334_o07.b1)MSMg01-334O07.TJ (MSMg01no334_o07.g1)
ACCAG450277AG450278
length756749
length of high quality
(start - end)
558 (75 - 632)252 (73 - 324)
definitionCHROMAT_FILE: MSMg01no334_o07.b1 PHD_FILE: MSMg01no334_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:28 2005CHROMAT_FILE: MSMg01no334_o07.g1 PHD_FILE: MSMg01no334_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCGGA
ATTCTTTTTTTTTTCCCCGCCAAACATTTTTTTTTTACCAATCAGTTCAG
GAGTATTTACTTTACAAAAAAAATAAGCACATTATTTTTTAAAATATAAA
ATAAAATACACAAGGTATATCAGTCATCTGTAAGTATTTTTAAGCTCTAG
AGAAATAGTGCTATAAATTATATGATTGAAAAGTCCATAGAAGAATGTTA
CCGTATCTTGATACCCTACGGGTGGTCATAAGTTCAATATCAGATTGGAA
GGAATCACTTTATGATGAGAGTATTTCACAGCAGGGATATTTGGATTGTG
GAAGCAGATGCTTGCCATGTGGGAAGACTGGTGTTTGAAGGATATAATTG
GCCTCACACTTTATGGTTGATGCTGGTGGGGTCTTCAAAATGGGGCTGAA
GGTCATGACCTTCCCTTATTTCATAGTTTTGGTGAAGCTGTGAAAGAGAT
TAACTCATTTCTAACAAACCTCACTTGTTCACAGAAATTTTCTGTTGGTC
TTAGGTTCAAGGCAGAAGAGCTGAATACCAAAATAAGTCTGGTTTCCTTC
TCAAATCATCTCTTTCATCACATCTCCTGAAACTGGCTTTAATTTGTTAA
ACCAGCGAGATGGGGGTGGAGCTCATACAGACTGTTGGTTTGTCACTTAT
CAAAGAGTTGACTTGTCAGGTTCTTATTCCTGGTCCCTTTTTATTTCCAT
CCCTTG
CGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTGGGAGGAAG
AAGCAGCTCATTATGAGAAAAAAGGGTACCAGCCAGGTAAAGTGCTAGCT
AATCAGTTAAGGAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTGCTGATTG
GCCTCAGGGCAGTCGGCTTCAAGGTCCGCCCTATGCGGAGTCCCCGCCCT
GCGTAGTGCGTCAGCCCTGCGCAGAGAGACAATGCGCAGAGAGGCAATGC
GCAGACTCATTCATTCCCAGAGAGGATTCTAGGAAAATACAACAGGCATT
TCCAGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCCGGTAGAAT
ACGTACAGATTAAAGAACTTGCCGAGTCGGTCCGTAAATACGGAACCAAT
GCTAATTTTACCTTGGTGCAGTTAGACAGGCTCGCCGGCATGGCACTAAC
TCCTGCCGACTGGCAAACGGTTGTAAAAGCCGCTCTCCCTAGTATGGGCA
AATATATGGAATGGAGAGCTCTTTGGCATGAAGCTGCACAAGCGCAGGCC
CGAGTAAACGCAGCTGTTTTGACTCCATAGCAGAGAGATTGGACTTTTGA
CTTGTTACAGGTTCAGGGAGCTTATTCCGCTGATCAAACTATCTACCTTT
GGGTAGCTTATGTCCCAATATTCCTCCCGTTTTATTACGTCCTGCATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_o07.b1 MSMg01no334_o07.b1 CHROMAT_FILE:
MSMg01no334_o07.b1 PHD_FILE: MSMg01no334_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:28 2005
         (558 letters)



>mm_chr19_19106970_19107926
          Length = 957

 Score = 1040 bits (538), Expect = 0.0
 Identities = 554/560 (98%), Gaps = 3/560 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttttttttt--accaatcagttcaggagtatttactttacaaaaaaaataagcacat 58
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 catttttttttttaaccaatcagttcaggagtatttactttacaaaaaaaataagcacat 258

                                                                       
Query: 59  tattttttaaaatataaaataaaatacacaaggtatatcagtcatctgtaagtattttta 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tattttttaaaatataaaataaaatacacaaggtatatcagtcatctgtaagtattttta 318

                                                                       
Query: 119 agctctagagaaatagtgctataaattatatgattgaaaagtccatagaagaatgttacc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agctctagagaaatagtgctataaattatatgattgaaaagtccatagaagaatgttacc 378

                                                                       
Query: 179 gtatcttgataccctacgggtggtcataagttcaatatcagattggaaggaatcacttta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtatcttgataccctacgggtggtcataagttcaatatcagattggaaggaatcacttta 438

                                                                       
Query: 239 tgatgagagtatttcacagcagggatatttggattgtggaagcagatgcttgccatgtgg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgatgagagtatttcacagcagggatatttggattgtggaagcagatgcttgccatgtgg 498

                                                                       
Query: 299 gaagactggtgtttgaaggatataattggcctcacactttatggttgatgctggtggggt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 499 gaagactggtgtttgaaggatataattggcctcacactttatggttgatgccggtggggt 558

                                                                       
Query: 359 cttcaaaatggggctgaaggtcatgaccttcccttatttcatagttttggtgaagctgtg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cttcaaaatggggctgaaggtcatgaccttcccttatttcatagttttggtgaagctgtg 618

                                                                       
Query: 419 aaagagattaactcatttctaacaaacctcacttgttcacagaaattttctgttggtctt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaagagattaactcatttctaacaaacctcacttgttcacagaaattttctgttggtctt 678

                                                                       
Query: 479 aggttcaaggcagaagagctgaataccaaaataagtctggtttccttctcaaatcatctc 538
           ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 679 aggttcatggcagaagagctgaaaaccaaaataagtctggtttccttctcaaatcatctc 738

                               
Query: 539 tttcatcacatctcctgaaa 558
           || |||||||||||||||||
Sbjct: 739 tt-catcacatctcctgaaa 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 957
Length adjustment: 10
Effective length of query: 548
Effective length of database: 947
Effective search space:   518956
Effective search space used:   518956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)