BAC Information

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BAC

Clone NameMSMg01-335H11
Chromosome19 (Build37)
Map Location 20,684,843 - 20,685,310
singlet/doubletsinglet
Overlap geneAldh1a1
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549
Downstream geneAldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335H11.T7 (MSMg01no335_h11.b1)MSMg01-335H11.TJ (MSMg01no335_h11.g1)
ACCAG450715AG450716
length713740
length of high quality
(start - end)
630 (31 - 660)460 (74 - 533)
definitionCHROMAT_FILE: MSMg01no335_h11.b1 PHD_FILE: MSMg01no335_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:14 2005CHROMAT_FILE: MSMg01no335_h11.g1 PHD_FILE: MSMg01no335_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGCTATACGACTCACTATTTGCAGAGGATCCGCGGAATTCCTGATCTTT
CCAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTG
CATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAA
TGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGG
AATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGA
TTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGA
GAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTCTGTGGTTTAGG
TATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTA
CTTCTATTTTGTGAAATAGTTTGTGCAGAATTGGAATTAGATCTTCTTTG
AAGGTCTGGTAGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTT
GGTTGGGAGACTATTAATAACTGCTTCTATTTCTTTAGGTGATATGGGAC
TGTTTAGATGGTCAACTTGATCCTGATTCAACTTTGGTACCTGGTATCTG
TCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAG
CCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTCTTCAGGATCTGTTG
TTATGTCTCCCTN
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATGCTAATTTTTAAGGCTAACTATAA
TGATTGGCTGGTTTCGACCTCATAGGTTGTGTATCTCTAACTTTAATACA
GAGCAGAGTCTATTAATTTTGTAGTAGGATGTTGGTGTGTTACTTTGGAA
CAAAAGAAATTTCATTCAGTTGGAGCAACAGGTAATGAGGAGATGCTGAT
AAAACTAGATTGAAGTATTACAAGAAAATGCTGTGGGTCCAACTAAGAAA
CTTGTGAAGGAAAGGAAAACAGAGGGGAACTTGGTAAGTAAGGCAGTGAA
TGGGGTGGTGGTGGTGAATGGNCTGAGCTCAGGGACTGTGGGACCAAAGG
TCAAGGTGAAAAACCACCTGGTACAGTTTGTATTTTATTTTACTGTGCAC
AAAGGAGTGCATATGTTTATTACATGATAAATACCACAAATAGCGGACAT
TTTGAGACAGGGCAAGACAAGCAATCTGTAGATGTCATATAGTACTTCAA
CACTACTTAAAAAAAATCCTCCAACCTGTGGCATATTTAAGCGCTTTTCC
TTGCTTTCTCTCCATCATCCCAGATCCTCATAAACAATGAACGCGCCCCT
TCTGTGATCGGCATGTAACTTCCTGTCCTTTATTCCTGCCCCTTAATACG
TCCTTTTTTCCGTGTAACACAGTTCCCCTGTATCTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_h11.g1 MSMg01no335_h11.g1 CHROMAT_FILE:
MSMg01no335_h11.g1 PHD_FILE: MSMg01no335_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:14 2005
         (460 letters)



>mm_chr19_20684651_20685510
          Length = 860

 Score =  779 bits (403), Expect = 0.0
 Identities = 448/468 (95%), Gaps = 8/468 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgctaatttttaaggctaactataatgattggctggtttcgacctcataggttgtgta 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 193 tatgctaatttttaaggctaactataatgattggctggtttcaacctcataggttgtgta 252

                                                                       
Query: 61  tctctaactttaatacagagcagagtctattaattttgtagtaggatgttggtgtgttac 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 253 tctctaactttaatacagagcagagcctattaattttgtagtaggatgttggtgtgttac 312

                                                                       
Query: 121 tttggaacaaaagaaatttcattcagttggagcaac--------aggtaatgaggagatg 172
           ||||||| ||||||||||||||||||||||||||||        ||||||||||||||||
Sbjct: 313 tttggaaaaaaagaaatttcattcagttggagcaactagtgaacaggtaatgaggagatg 372

                                                                       
Query: 173 ctgataaaactagattgaagtattacaagaaaatgctgtgggtccaactaagaaacttgt 232
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 373 ctgataaaactagattgaagtattacaagaaaatgctgtgggtccaactaagaaacttat 432

                                                                       
Query: 233 gaaggaaaggaaaacagaggggaacttggtaagtaaggcagtgaatggggtggtggtggt 292
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 433 gaaggaaaggaaaacagaggggagcttggtaagtaaggcagtgaatggggtggtggtggt 492

                                                                       
Query: 293 gaatggnctgagctcagggactgtgggaccaaaggtcaaggtgaaaaaccacctggtaca 352
           |||||| |||||||||  |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 493 gaatgggctgagctcacagactgtgggaccaaaggtcaaggtgaaaaaacacctggtaca 552

                                                                       
Query: 353 gtttgtattttattttactgtgcacaaaggagtgcatatgtttattacatgataaatacc 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 553 gtttgtattttattttactgtgcacaaaggagtgcatatgtttattacatgataaataca 612

                                                           
Query: 413 acaaatagcggacattttgagacagggcaagacaagcaatctgtagat 460
           |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 613 acaaatggtggacattttgagacagggcaagacaagcaatctgtagat 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)