BAC Information

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BAC

Clone NameMSMg01-338A09
Chromosome19 (Build37)
Map Location 7,155,970 - 7,156,581
singlet/doubletsinglet
Overlap geneD930010J01Rik
Upstream geneBatf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1
Downstream geneFlrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338A09.T7 (MSMg01no338_a09.b1)MSMg01-338A09.TJ (MSMg01no338_a09.g1)
ACCAG452656AG452657
length734789
length of high quality
(start - end)		615 (23 - 637)87 (69 - 155)
definitionCHROMAT_FILE: MSMg01no338_a09.b1 PHD_FILE: MSMg01no338_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:34 2005CHROMAT_FILE: MSMg01no338_a09.g1 PHD_FILE: MSMg01no338_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCCTATAGGTTCCGGATCCGCGGAATTCATCTTCCTTCTCTCCTTCC
TCCCTCCCTCCCTCCTTCCTTCCTCCCTCCTTCCTTCCCTCCCTCCTTCC
TCCCTTCCTTTCTTCCTTTCAAACAAGCTCTCATGTAGCCATGCTGGCTT
AGAACTGACTCACTATGTTGACCATGAACATCTGATCCTGTTGCTTCCTG
AGGTCAGGGACTGCAGTGTGCCATGCCGTGATGGTTTTATGACTGCACAT
TCTCTCCCACCTCCAGCTCTGACACGGGCCATTCCCCTGGCTAGGAGCAC
TCTTGTATCTACTTCTTTCTGGCTTACGTTGAATGTCTCCCAGGTCCTAC
ACGGACTTCCCTTAACCTGAGTCAGATGTTCTCTTGTGAGTTGCATATTC
AGCTATGACCTGTTTCTCCAGCAGCTCCATGGGGTGCCAGAGCTACAGTG
GAGGATCATGGGAAACAAGATCCATACAGCATACTCCAGAGTGTGACACA
GTCATGTGTTATGTGTGTGGGTAGTCTGAAGAAGTGGCTTATCCCTCTGT
ACCACACTAGAAAGCTGGTGGCAGGTGGCAGTGCCTTTTCTTGCCAGCCC
ATCCTACAGAGTCCTCTGTAGAGCCTAGCATGGCCTGTCCACAGTGGAGC
TCCTCTTGATGGGGGAGCCCACACTTCCCATGGGCAGCCCTGGGGAATCT
GGATCCGTTGTGCTTGAATCATCTTCCCCCCCCN

CTTTGGGAANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTGCTCTGTGTGAGTGAAAAATGAACTTTGT
CCCCGTGTTTGCTGTGTTACTTANAATATTCCTCATCANAGTTTTCAACG
AGTACTCTGAAATCTCTCTCCCAAAGANNANCCTGATGCGCTGTGTCTGT
TAGCTTAGTGTTNTNNNNNNNNNNTTTTTCCCCCGGTGTTTTTTTNCCCT
TTTTTTTGTGCGGGAAACAGATTTTTTTCCCCCCAAATTCCCCATTGGTT
TTTGGNNNNAGAAAAAGCTGGGGGGAGGGAGGGGGGGAGGATGGGGGGGG
GGGAAGGGGGGGGAGAGAGAGGAGGGGGGGGGGGNNNNNNNNNNNNNNNN
NNTTNTTTTTTTTATGAGCANAGGGGGGGGGGGGGGGGGGGGGGGGGCTN
NNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNN
NNNNNNNNANNNNNNNNNNTCTGGNNGNNNNNNNNNTNNANNNTNATNNN
AATTNNTTCCTNNNTNTTNTNNNNNNNNNNTTTTTTNNNNNNNTTTTTTT
TTNTNTTTTTTNNNNNTTTTTNNNTTNNNNNNNTTNNTNNNTTTTTTTTT
TTTTTTNTTNTNNNTTTTTTTTTTTTTGAGAGGAGTCCNTTNTTTTTNNT
TTNTNTTTNNNNNNTTTTTTTTTTTTTTTTTNTTTTTTTTTTNTTTTTTT
TTTTTTTTTTTTTTTTTTTTATGTTGTATGTGGAGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_a09.b1 MSMg01no338_a09.b1 CHROMAT_FILE:
MSMg01no338_a09.b1 PHD_FILE: MSMg01no338_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:34 2005
         (615 letters)



>mm_chr19_7155767_7156781
          Length = 1015

 Score = 1129 bits (584), Expect = 0.0
 Identities = 605/612 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcatcttccttctctccttcctccctccctccctccttccttcctccctccttcct 63
           |||||||||||||||| ||||||||||||||||||| |||| ||| ||||||||||| ||
Sbjct: 204 gaattcatcttccttccctccttcctccctccctccttcctccctccctccctccttact 263

                                                                       
Query: 64  tccctccctccttcctcccttcctttcttcctttcaaacaagctctcatgtagccatgct 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 264 tccctccctccttcctcccttcctttcttcctttcaaacaagctctcatgtagccacgct 323

                                                                       
Query: 124 ggcttagaactgactcactatgttgaccatgaacatctgatcctgttgcttcctgaggtc 183
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 324 ggcttagaactgactcactatgttgaccgtgaacatctgatcctgttgcttcctgaggtc 383

                                                                       
Query: 184 agggactgcagtgtgccatgccgtgatggttttatgactgcacattctctcccacctcca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agggactgcagtgtgccatgccgtgatggttttatgactgcacattctctcccacctcca 443

                                                                       
Query: 244 gctctgacacgggccattcccctggctaggagcactcttgtatctacttctttctggctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gctctgacacgggccattcccctggctaggagcactcttgtatctacttctttctggctt 503

                                                                       
Query: 304 acgttgaatgtctcccaggtcctacacggacttcccttaacctgagtcagatgttctctt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acgttgaatgtctcccaggtcctacacggacttcccttaacctgagtcagatgttctctt 563

                                                                       
Query: 364 gtgagttgcatattcagctatgacctgtttctccagcagctccatggggtgccagagcta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtgagttgcatattcagctatgacctgtttctccagcagctccatggggtgccagagcta 623

                                                                       
Query: 424 cagtggaggatcatgggaaacaagatccatacagcatactccagagtgtgacacagtcat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cagtggaggatcatgggaaacaagatccatacagcatactccagagtgtgacacagtcat 683

                                                                       
Query: 484 gtgttatgtgtgtgggtagtctgaagaagtggcttatccctctgtaccacactagaaagc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtgttatgtgtgtgggtagtctgaagaagtggcttatccctctgtaccacactagaaagc 743

                                                                       
Query: 544 tggtggcaggtggcagtgccttttcttgccagcccatcctacagagtcctctgtagagcc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tggtggcaggtggcagtgccttttcttgccagcccatcctacagagtcctctgtagagcc 803

                       
Query: 604 tagcatggcctg 615
           ||||||||||||
Sbjct: 804 tagcatggcctg 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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