BAC Information

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BAC

Clone NameMSMg01-338C06
Chromosome19 (Build37)
Map Location 44,931,182 - 44,967,793
singlet/doubletdoublet
Overlap geneLOC100042752
Upstream geneDnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450
Downstream gene6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338C06.T7 (MSMg01no338_c06.b1)MSMg01-338C06.TJ (MSMg01no338_c06.g1)
ACCAG452746AG452747
length741763
length of high quality
(start - end)		635 (44 - 678)333 (65 - 397)
definitionCHROMAT_FILE: MSMg01no338_c06.b1 PHD_FILE: MSMg01no338_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:42 2005CHROMAT_FILE: MSMg01no338_c06.g1 PHD_FILE: MSMg01no338_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,967,163 - 44,967,793)(44,931,182 - 44,931,512)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATTTCCCTCCAGCCCTTTCCACTCTTCTTCCCCACCCCCACATCTA
CACACCTGCACCATCAAACGGGTTTGTCTTTAACCTCCAAACAGGGAACT
TTAATTAAAGAGACAGTGACCCCTTTTATGAGTTTGGCCGAGTTGGGTTT
CAGGGCCCTTGTCACTAGCGGCTCACATAACGCTAACAAAAGCTTGCAGG
CCCCAAGAGGAGCTGTCTCCCTTATGGACACTGTGGTGGGGGCACAGGGT
AGTTATGGGGGGGCATGGGAAGAGGGAGCCATCTTAGGGTCAGGAGCCCC
AGTGACTGAATCTGTGAGATTGGAGTTGAAGGAGAACGGGCTAGGATCCC
CAAAGGGGAACATGGACTGTGTAATTCCTTTGGAGCTTGATCGCACAAAA
GGACACCATGTGGATCCTAGCACTATGCTGGGAGCTCCTTGTGTCATGGA
TCAACTTCCAGCAGGGCCTCCTGTCGGTGTCCAGGGCTCTTAGATCATGT
ACTTGTGTTGTCTTACTCTCTCGTGCTACAAAACTGGAAATAATTTCCCA
GGAGAATAGGCTGACTAGAATTCACTCTGAAGAATAGCCATTTTTTTCTT
ACATATTTAAGGAAAAGTGACTTTATGATAAGACGTGATTGCTAATAACT
ATAATAACACACCACTCAGCACACAGCAGAGAATGTGAAAT

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGGGCTAGCCTGGGATTTGCAAGATCTGTCTCAAAT
TCAAAAGGAAAAAAATTATCTAATAGGTTATAAGTTGATAGTTGTTGGTT
CTGAAATCACTGTACCGTTCACTCACTTTTGTATATACTTGAAGTTTTAA
AAAACAACTGTTTAAACTAAGGCTATACTGAAAAGAGCTGTTAAAATTTG
GGGTAGCCAGGCTGGAGATCAGTGATGGAGTCCTTATCTAGAATGCCTAA
TGTCCTAGGTCAAAAAGAGAGGAAGGGAAGAAGGAAGGAAGGGAAGGAAG
GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGGGAGGNANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTNNNNNNNNNNNNNANNTNNNNNNNTNNTTTNNNTTTTTTTTTTTT
TGTGTGTTTTTTGTGTTTTGTTTTTTTTTTGNGTTTGTTTTTTATTGTTT
TGTTTTATTTTTTTTTTTTTTTTATTATTTTATTATTTTTTTTTATTTAT
TTTTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_c06.b1 MSMg01no338_c06.b1 CHROMAT_FILE:
MSMg01no338_c06.b1 PHD_FILE: MSMg01no338_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:42 2005
         (635 letters)



>mm_chr19_44966959_44967993
          Length = 1035

 Score = 1205 bits (623), Expect = 0.0
 Identities = 629/631 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatttccctccagccctttccactcttcttccccacccccacatctacacacct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 gaattccatttccctccagccctttccactcttcttccccacccccacatctacacacct 776

                                                                       
Query: 65  gcaccatcaaacgggtttgtctttaacctccaaacagggaactttaattaaagagacagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gcaccatcaaacgggtttgtctttaacctccaaacagggaactttaattaaagagacagt 716

                                                                       
Query: 125 gaccccttttatgagtttggccgagttgggtttcagggcccttgtcactagcggctcaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gaccccttttatgagtttggccgagttgggtttcagggcccttgtcactagcggctcaca 656

                                                                       
Query: 185 taacgctaacaaaagcttgcaggccccaagaggagctgtctcccttatggacactgtggt 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 655 taacgctaacaaaagcttgcaggccccaagaggaactgtctcccttatggacactgtggt 596

                                                                       
Query: 245 gggggcacagggtagttatgggggggcatgggaagagggagccatcttagggtcaggagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gggggcacagggtagttatgggggggcatgggaagagggagccatcttagggtcaggagc 536

                                                                       
Query: 305 cccagtgactgaatctgtgagattggagttgaaggagaacgggctaggatccccaaaggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 cccagtgactgaatctgtgagattggagttgaaggagaacgggctaggatccccaaaggg 476

                                                                       
Query: 365 gaacatggactgtgtaattcctttggagcttgatcgcacaaaaggacaccatgtggatcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaacatggactgtgtaattcctttggagcttgatcgcacaaaaggacaccatgtggatcc 416

                                                                       
Query: 425 tagcactatgctgggagctccttgtgtcatggatcaacttccagcagggcctcctgtcgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tagcactatgctgggagctccttgtgtcatggatcaacttccagcagggcctcctgtcgg 356

                                                                       
Query: 485 tgtccagggctcttagatcatgtacttgtgttgtcttactctctcgtgctacaaaactgg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgtccagggctcttagatcatgtacttgtgttgtcttactctctcgtgctacaaaactgg 296

                                                                       
Query: 545 aaataatttcccaggagaataggctgactagaattcactctgaagaatagccattttttt 604
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 295 aaataatttcccaggagaataggctggctagaattcactctgaagaatagccattttttt 236

                                          
Query: 605 cttacatatttaaggaaaagtgactttatga 635
           |||||||||||||||||||||||||||||||
Sbjct: 235 cttacatatttaaggaaaagtgactttatga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no338_c06.g1 MSMg01no338_c06.g1 CHROMAT_FILE:
MSMg01no338_c06.g1 PHD_FILE: MSMg01no338_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:42 2005
         (333 letters)



>mm_chr19_44930982_44931714
          Length = 733

 Score =  625 bits (323), Expect = 0.0
 Identities = 329/331 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggctagcctgggatttgcaagatctgtctcaaattcaaaaggaaaaaaattatctaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggctagcctgggatttgcaagatctgtctcaaattcaaaaggaaaaaaattatctaat 260

                                                                       
Query: 61  aggttataagttgatagttgttggttctgaaatcactgtaccgttcactcacttttgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggttataagttgatagttgttggttctgaaatcactgtaccgttcactcacttttgtat 320

                                                                       
Query: 121 atacttgaagttttaaaaaacaactgtttaaactaaggctatactgaaaagagctgttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacttgaagttttaaaaaacaactgtttaaactaaggctatactgaaaagagctgttaa 380

                                                                       
Query: 181 aatttggggtagccaggctggagatcagtgatggagtccttatctagaatgcctaatgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatttggggtagccaggctggagatcagtgatggagtccttatctagaatgcctaatgtc 440

                                                                       
Query: 241 ctaggtcaaaaagagaggaagggaagaaggaaggaagggaaggaaggaaggaaggaagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaggtcaaaaagagaggaagggaagaaggaaggaagggaaggaaggaaggaaggaagga 500

                                          
Query: 301 aggaaggaaggaaggaaggaagggagggagg 331
           ||||||||||||||| ||| |||||||||||
Sbjct: 501 aggaaggaaggaagggagggagggagggagg 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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