BAC Information

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BAC

Clone NameMSMg01-338H20
Chromosome19 (Build37)
Map Location 57,727,749 - 57,728,381
singlet/doubletsinglet
Overlap geneAtrnl1
Upstream geneAdrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540, Trub1, LOC100043038
Downstream geneGfra1, LOC100043503, 1700011F14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338H20.T7 (MSMg01no338_h20.b1)MSMg01-338H20.TJ (MSMg01no338_h20.g1)
ACCAG453005AG453006
length758659
length of high quality
(start - end)
624 (63 - 686)46 (108 - 153)
definitionCHROMAT_FILE: MSMg01no338_h20.b1 PHD_FILE: MSMg01no338_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:08 2005CHROMAT_FILE: MSMg01no338_h20.g1 PHD_FILE: MSMg01no338_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
TCACGTTCCCGCATGAGGTCAGAGCACAAAGTGCATGTTTGTCTACACAC
TTGGGATAAGCAATCTAAAAGCAAAGTTAGCAAAGCAATCTCACTGAACA
CCAAAAAGCACAACGTGTTTAGGAGTCGATCTACAAAAAGAGTTTAAAAC
TGAAGTTATAAAAACACAGCTGAAATGTACAAAGATATGAATGGGAAAAC
ACTCCACATTCAGGGATCCCCCGCCTTTGTCCACAGAGGTGACAAAGATC
TCCCCGTCTGTGCACATTACTCGGCTCCATCTCTGTCACGGAGTTCTCTG
CAGAATCAGAAACCCCATTCTAAGAGTCAACTATAAGAGCAAGGGCTACG
GAAAAGTAGACCAGTCTGTCAAAGCGAAGAGACTTCTTTAAAACAGTACA
AAGCAGGTCTGAAGACAGTGTGGTCTGACACAAATCAGCACAGGAGAATG
AGGAGCCCAGAGTAATAAGAGACGCGCCTGTGGTCAGACGGCGCTAAGAC
TACTCAATGAGAAAAGGTGCTGCTCTGTAGTAAATGTGGGAAACACAGAC
ACGGCAAAACCGTGAGGCTGAACCCGTACTGCTCGTCATACCCCTAATTT
TTAAAAACGGATGATATAGGTAAATGAATCCAAGAGGCAAGTCTCCCGAA
GCCCTCCTTCCTGAGTANGAAACCAAGTGAGAAGCCGCCCTCTGTGACGC
GGTGAAAG
CCCTTTCCTTNTNNTTNCCGCCCCNNTCNNGGCGATATATXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTGCCTGATGTGCACTGTGACAGCCGGGGTGGTGAATAAATTC
ACGGAGGTAGTGGAAACAAATGCTATANTGTTGAGATTTTATCAACAGGA
CTGGGAGCAATGGCTCAGTGATTAAGAACATTTGTTTCCTCCTGTGGAGG
ACCTGGGTTTCTGTTCCCAGGCACCCACACTGTAGCTTTCCACCCACCTG
GTACCTCCCGGGTCCAAGGGAATCTGTCCCCCCCTTCCTCCGGAATTCCC
TGGTGGGACCCCAAGCACCTCCTGGGGGTGGGGCCCAATAACATTATTGG
GGGACCCCCAAAAAAACCCCCCTGGCCCCTTTTAAAAATCCCCCCCTTTA
AAANAAATTTCTCTTTAAAATTTTTTAAAAAAAATTAAAGGGGGGGTGCC
CCCCCAATTTTAGGAGGGGTTTTTTAACCCGGGCCTTTGGAAAACAAAAA
AATAATCCCCTTGTTGTGCCCCCCCGGGGGGCCTCTTCTTTTTTTTTGGT
GGGGAAAACACCACCCCTTTTTTTTATTTTGTGGGGGGGCCGCGGGTGCC
CTCAATACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_h20.b1 MSMg01no338_h20.b1 CHROMAT_FILE:
MSMg01no338_h20.b1 PHD_FILE: MSMg01no338_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:08 2005
         (624 letters)



>mm_chr19_57727732_57728755
          Length = 1024

 Score = 1079 bits (558), Expect = 0.0
 Identities = 611/634 (96%), Gaps = 11/634 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaggtcagagcacaaagtgcatgtttgtctacacacttgggataagcaatctaaaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 atgaggtcagagcacaaagtgcatgtttgtctacacacttgggataagcaatctaaaagc 591

                                                                       
Query: 61  aaagttagcaaagcaatct-cactgaacaccaaaaagcacaacgtgtttaggagtcgatc 119
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aaagttagcaaagcaat-tacactgaacaccaaaaagcacaacgtgtttaggagtcgatc 532

                                                                       
Query: 120 tacaaaaagagtttaaaactgaagttataaaaacacagctgaaatgtacaaagatatgaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tacaaaaagagtttaaaactgaagttataaaaacacagctgaaatgtacaaagatatgaa 472

                                                                       
Query: 180 tgggaaaacactccacattcagggatcccccgcctttgtccacagaggtgacaaagatct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tgggaaaacactccacattcagggatcccccgcctttgtccacagaggtgacaaagatct 412

                                                                       
Query: 240 ccccgtctgtgcacattactcggctccatctctgtcacggagttctctgcagaatcagaa 299
           || ||||||||||||  |||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 411 ccacgtctgtgcacagcactcagctccatctctgtcacagagttctctgcagaatcagaa 352

                                                                       
Query: 300 accccattctaagagtcaactataagagcaagggctacggaaaagtagaccagtctgtca 359
           | ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atcccatgctaagagtcatctataagagcaagggctacggaaaagtagaccagtctgtca 292

                                                                       
Query: 360 aagcgaagagacttctttaaaacagtacaaagcaggtctgaagacagtgtggtctgacac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 291 aagcgaagagacttctttaaaacagtacaaagcaggtctgaagacagtgtggtctgacat 232

                                                                       
Query: 420 aaatcagcacaggagaatgaggagcccaga---------gtaataagagacgcgcctgtg 470
           ||||||||||||||||||||||||||||||         || ||||||||||||||||||
Sbjct: 231 aaatcagcacaggagaatgaggagcccagagacgcactggtgataagagacgcgcctgtg 172

                                                                       
Query: 471 gtcagacggcgctaagactactcaatgagaaaaggtgctgctctgtagtaaatgtgggaa 530
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gtcagacgacgctaagactactcaatgagaaaaggtgctgctctgtagtaaatgtgggaa 112

                                                                       
Query: 531 acacagacacggcaaaaccgtgaggctgaacccgtactgctcgtcatacccctaattttt 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 acacagacacggcaaaaccgtgaggctgaacccgtactgctcgtcatacccctaattttt 52

                                             
Query: 591 aaaaacggatgatataggtaaatgaatccaagag 624
           |||||||||||| |||||||||||||||||||||
Sbjct: 51  aaaaacggatgaaataggtaaatgaatccaagag 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)