Query= MSMg01no338_j01.b1 MSMg01no338_j01.b1 CHROMAT_FILE:
MSMg01no338_j01.b1 PHD_FILE: MSMg01no338_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:13 2005
(598 letters)
>mm_chr19_54831614_54832613
Length = 1000
Score = 833 bits (431), Expect = 0.0
Identities = 494/517 (95%), Gaps = 7/517 (1%)
Strand = Plus / Minus
Query: 88 tttatgagaggtgaaatgatgtgatttattggcaggcctggtcatgaagccgtccttcca 147
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 tttatgagaggagaaatgatgtgatttattggcaggcctggtcatgaagccgtccttcca 941
Query: 148 ggacattgataccacgagtctactcaatgtgttagtgtgcacatgggtttcctggccatc 207
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 940 ggacattgataccacgagtctactcaatgtgttagtgtgtgcatgggtttcctggccatc 881
Query: 208 tactgaagcatggggctttctcagggactgcatccagaaa-tgaagcccgtttcctgagc 266
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct: 880 tactgaagcatggggctttctcagggactgcatccagaaactg-agcccgtttcccgagc 822
Query: 267 agtcatccgctgctcattagctccttggctactaggaagaaaaccatatttttaaatgaa 326
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 agtcatctgttgctcattagctccttggctactaggaagaaaaccatatttttaaatgaa 762
Query: 327 aaaa--atgtaatatgaaatggaattatgacatgggagagaagtgaactaccaagttacc 384
|||| ||||||||||||||| ||||||||||||| |||||| ||||| |||||||||||
Sbjct: 761 aaaaagatgtaatatgaaatgaaattatgacatggaagagaactgaacgaccaagttacc 702
Query: 385 acatggaagaaaaaccatcacccaggataatctgactctgattaagagaataagaaatga 444
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 acatgggagaaaaaccatcacccaggataatctgactctgattaagagaataagaaatga 642
Query: 445 aagcaagtgaatgtttgagcatgcaggacatgtttgttactgtcatataactgacctggt 504
||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||
Sbjct: 641 aagcaagtgaatgtttgagcatgcagggcgtgtttgttactgtcatgtaactgacctggt 582
Query: 505 gtcaagcaaaacacttgtccatttaactcacgagactttcctggaaataaagacgactct 564
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gtcaaacaaaacacttctccatttaactcacgagactttcctggaaataaagacgactct 522
Query: 565 gcttatgttaatatttcc---ttttttaagtagatat 598
|||||||||||||||||| ||||||||||||||||
Sbjct: 521 gcttatgttaatatttcctttttttttaagtagatat 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 1000
Length adjustment: 10
Effective length of query: 588
Effective length of database: 990
Effective search space: 582120
Effective search space used: 582120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_j01.g1 MSMg01no338_j01.g1 CHROMAT_FILE:
MSMg01no338_j01.g1 PHD_FILE: MSMg01no338_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:13 2005
(521 letters)
>mm_chr19_54690871_54691791
Length = 921
Score = 868 bits (449), Expect = 0.0
Identities = 501/525 (95%), Gaps = 12/525 (2%)
Strand = Plus / Plus
Query: 1 cactccctgtgatgggataggtacttttatcataaaagttgatatcataagcgtcttgtg 60
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 201 cactccctgtgatgggataggtacttttatcataaaagttggtatcataagcatcttgtg 260
Query: 61 ggactggttcttttgagagtgaatcatgcagcaaattgcctcttgtggtttacttgtttc 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ggactggttcttttgagagtgaatcatgcagcaagttgcctcttgtggtttacttgtttc 320
Query: 121 ctctcgccaccctcactgtcttgttcttcccactgtcgaatgcccttgaccctactatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctcgccaccctcactgtcttgttcttcccactgtcgaatgcccttgaccctactatga 380
Query: 181 ggttggataaggccctcaccagatgtgactacttgatcttgagatttcatcttttaaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ggttggataaggccctcaccagatgtgactacttgatcttgagatttcacctt------- 433
Query: 241 tctaaagcaaaacttttgcttctgcattatccaacctctagtgtctactgtctgctatat 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 -ctaaagcaaaacttttgcttctgcattatccaacctctagtgtctactgtctgctatat 492
Query: 301 tctatttactatttctataccaactgaaaaacaatgaaccaagacattcaatgatgcagg 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 493 tctatttactatttctataccaattgaaaaacaatgaaccaagacattcaatgatgcagg 552
Query: 361 taagctgatgtgcatggagagtgtattccttctgagtgtggttcacagaccatgacattt 420
||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 553 taaactgatgtgtatggagagtgtattctttctgagtgtggttcacagaccatgatattt 612
Query: 421 cgcaagatgcccagactctcaggaaatgaatgagtaag----ataattctccttcctact 476
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 613 cgcaagatgcccagactctcaggaaaggaatgagtaagtaagataattctccttcccact 672
Query: 477 gctctgtactgcaccagtgccgagagcttggagctgtcctggcca 521
|||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 673 gctctgtactgcaccagtgccgagagctcggagctgtcctggcca 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
