BAC Information

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BAC

Clone NameMSMg01-338K19
Chromosome19 (Build37)
Map Location 55,995,608 - 56,166,156
singlet/doubletdoublet
Overlap geneTcf7l2, LOC100043484
Upstream geneGpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479, Ppnr
Downstream geneHabp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338K19.T7 (MSMg01no338_k19.b1)MSMg01-338K19.TJ (MSMg01no338_k19.g1)
ACCAG453146AG453147
length712725
length of high quality
(start - end)		569 (21 - 589)567 (72 - 638)
definitionCHROMAT_FILE: MSMg01no338_k19.b1 PHD_FILE: MSMg01no338_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:22 2005CHROMAT_FILE: MSMg01no338_k19.g1 PHD_FILE: MSMg01no338_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,165,591 - 56,166,156)(55,995,608 - 55,996,174)
sequence
ACTCCTATAGGTTGCGGATCCGCGGAATTCCATGATTTCTATGCAAGCTG
ACCTCTGCTCAGACTCTGGTCTAACACTTTCTATCTTCAGTCTTGCTCAG
GCCTCTAGTAAGACACTCTGGTTCAAACTATTGCCAACAGCCATGTTGTT
AGCCTCCTTGGTACCACCTCCCAGTGTCCTACCTTCCAACGTGTTCTTAC
AAGACCCTAAACTACCCAGGTACTTCTCTGACCCTGAGGTGCTCTTTCAA
AAGTGGCTCAGTGGCTCCCTCTTGTTCGAGAAAAGAACCCTTCACCCAGT
TTATCTCATTTCCTTCTCAGCCACCAGTGCCCTAGGAAGTCAGCATGACC
CGCCAATCTCTTCAGGATGACTCCTGACAGTTTGTGGTCCTAGATGGTAA
TATGGATTCTAAGAGTATCTGACCTGAGAAGTTCTACACTGAGGCCATGT
CTGACAAACATAGCAAGAGTATGCCAACACAGGGGTGCCTATAGGTCAGG
GGTTCTGATGTCCCAGTCCCCTGAAGCTGCTAGAACCATCATAATCAATG
TCACTCTTCTTGGTTTATGCAGAGTCCCACACTTGTGAATACAGGGACAA
CATTTGGGGCACAGTTTCTCCTCGGGGCCTGTGTAACTCCCATTTCTAAG
ACAAGCCTATTTTCTAATGGGCCCAGAGCCTGGAAAGGAACAACCATGGG
TTCCTAGGTATT

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTCANAGAGACAGGCAGACTTGGTGGCA
GTGTCAGAAGCATTCGAGTCTGACTTGCAGGGAGTCCCTTAGACACTGTC
CAAAGCCTTCTGTGATGTGCTCTCTAGACTTTTCAGAAGGTTCCCATGGC
AATGCCCTGACTTCCCCTTACTACTGCATGGGAAGGTAGCTGGCTAATAG
GAGCCACTGAGGTAATGGGAGGGATAGTTTAGAGGCAATTCGGATGCAGG
ACTGCGGGAACTTGATCTCTTGGCTCTCAGGCTCCTCCTGTCTCGGCGTC
TCGTCACACACGTGTGAGAATGTGCGCTTGCTCCTTCCTTCTGTGCTCTA
GGGAAGACAGTGGGGTCAAGAAGTTCACACCTGAAGCCTCTGTGGGTTTG
ATTCTGGTGAGAACCGGTTGACAGGTCCTTTTTCACCAATTTGATGATGG
AGCTTCTGCAGATAGCCACGGTTACCGTGAAGCCAAGGAGGTTCTACTGG
GAAATGTGTCCTGAGTCAGCTCCTCCTGTCTTTCCAGCCAAGTGTGCCTT
TATGTCACCACCTTAAGGAAGTACATTAGAATGAAACCCAATCTGTGTGC
TCAGACTTGACCCGTCCTTCAGGACCCTAGGAGAAGGAGAAGCTAGCTGG
GTACCATTGTAACAGCCCGTTGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_k19.b1 MSMg01no338_k19.b1 CHROMAT_FILE:
MSMg01no338_k19.b1 PHD_FILE: MSMg01no338_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:22 2005
         (569 letters)



>mm_chr19_56165388_56166356
          Length = 969

 Score = 1017 bits (526), Expect = 0.0
 Identities = 556/566 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatgatttctatgcaagctgacctctgctcagactctggtctaacactttcta 63
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ggaattccatgatttcaatggaagctgacctctgctcagactctggtctaacactttcta 710

                                                                       
Query: 64  tcttcagtcttgctcaggcctctagtaagacactctggttcaaactattgccaacagcca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tcttcagtcttgctcaggcctctagtaagacactctggttcaaactattgccaacagcca 650

                                                                       
Query: 124 tgttgttagcctccttggtaccacctcccagtgtcctaccttccaacgtgttcttacaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tgttgttagcctccttggtaccacctcccagtgtcctaccttccaacgtgttcttacaag 590

                                                                       
Query: 184 accctaaactacccaggtacttctctgaccctgaggtgctctttcaaaagtggctcagtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 accctaaactacccaggtacttctctgaccctgaggtgctctttcaaaagtggctcagtg 530

                                                                       
Query: 244 gctccctcttgttcgagaaaagaacccttcacccagtttatctcatttccttctcagcca 303
           ||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 529 gctccctcttgtttgagaaaagaacccttcacccagttcagctcatttccttctcagcca 470

                                                                       
Query: 304 ccagtgccctaggaagtcagcatgacccgccaatctcttcaggatgactcctgacagttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 469 ccagtgccctaggaagtcagcatgacccgccaatctcttcaggatgactcctgacggttt 410

                                                                       
Query: 364 gtggtcctagatggtaatatggattctaagagtatctgacctgagaagttctacactgag 423
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gcggtcctagatggtaatatggattctaagagtatctgacctgagaagttctacactgag 350

                                                                       
Query: 424 gccatgtctgacaaacatagcaagagtatgccaacacaggggtgcctataggtcaggggt 483
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 349 accatgtctgacaaacatagcaagagtgtgccaacacaggggtgcctataggtcaggggt 290

                                                                       
Query: 484 tctgatgtcccagtcccctgaagctgctagaaccatcataatcaatgtcactcttcttgg 543
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 actgatgtcccagtcccctgaagctgctagaaccatcataatcaatgtcactcttcttgg 230

                                     
Query: 544 tttatgcagagtcccacacttgtgaa 569
           ||||||||||||||||||||||||||
Sbjct: 229 tttatgcagagtcccacacttgtgaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no338_k19.g1 MSMg01no338_k19.g1 CHROMAT_FILE:
MSMg01no338_k19.g1 PHD_FILE: MSMg01no338_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:22 2005
         (567 letters)



>mm_chr19_55995408_55996374
          Length = 967

 Score = 1067 bits (552), Expect = 0.0
 Identities = 563/567 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcanagagacaggcagacttggtggcagtgtcagaagcattcgagtctgacttgcagg 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcaaagagacaggcagacttggtggcagtgtcagaagcattcgagtctgacttgcagg 260

                                                                       
Query: 61  gagtcccttagacactgtccaaagccttctgtgatgtgctctctagacttttcagaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtcccttagacactgtccaaagccttctgtgatgtgctctctagacttttcagaaggt 320

                                                                       
Query: 121 tcccatggcaatgccctgacttccccttactactgcatgggaaggtagctggctaatagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccatggcaatgccctgacttccccttactactgcatgggaaggtagctggctaatagg 380

                                                                       
Query: 181 agccactgaggtaatgggagggatagtttagaggcaattcggatgcaggactgcgggaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccactgaggtaatgggagggatagtttagaggcaattcggatgcaggactgcgggaac 440

                                                                       
Query: 241 ttgatctcttggctctcaggctcctcctgtctcggcgtctcgtcacacacgtgtgagaat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 ttgatctcttggctctcaggctcctcctgtctcggcgtctcgtcacacacgtgtgagagt 500

                                                                       
Query: 301 gtgcgcttgctccttccttctgtgctctagggaagacagtggggtcaagaagttcacacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 gtgcgcttgctccttccttctgtgctctagggaagacagtggggtcaagaatttcacacc 560

                                                                       
Query: 361 tgaagcctctgtgggtttgattctggtgagaaccggttgacaggtcctttttcaccaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaagcctctgtgggtttgattctggtgagaaccggttgacaggtcctttttcaccaatt 620

                                                                       
Query: 421 tgatgatggagcttctgcagatagccacggttaccgtgaagccaaggaggttctactggg 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 tgatgatggagcttctgcagatagccacggttaccgtgaagcccaggaggttctactggg 680

                                                                       
Query: 481 aaatgtgtcctgagtcagctcctcctgtctttccagccaagtgtgcctttatgtcaccac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaatgtgtcctgagtcagctcctcctgtctttccagccaagtgtgcctttatgtcaccac 740

                                      
Query: 541 cttaaggaagtacattagaatgaaacc 567
           |||||||||||||||||||||||||||
Sbjct: 741 cttaaggaagtacattagaatgaaacc 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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