Query= MSMg01no339_f10.b1 MSMg01no339_f10.b1 CHROMAT_FILE:
MSMg01no339_f10.b1 PHD_FILE: MSMg01no339_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:09 2005
(548 letters)
>mm_chr19_40603765_40604711
Length = 947
Score = 669 bits (346), Expect = 0.0
Identities = 361/366 (98%), Gaps = 1/366 (0%)
Strand = Plus / Minus
Query: 183 ataagcaagaggacctgaggctgaatatccagcattcaccaaaggctgaacctcgctgtt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 947 ataagcaagaggacctgaggctgaatatccagcattcaccaaaggctgaacctggctgtt 888
Query: 243 cagcggcttgccttgttcagtgagagaccctatttccaaaaataaagaaacaaaactaac 302
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 887 cagcggcttgccttgttcagtgagagaccttatttccaaaaataaagaaacaaaactaac 828
Query: 303 caaaacaacaaaaggagagtgataatcaaagacatttgacatccccctctggcctctgca 362
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 caaaacaacaaaaggggagtgataatcaaagacatttgacatccccctctggcctctgca 768
Query: 363 tgcatgtgcacctgcacacatgtgtgcatccatcacagacaccccaccatcaataacaaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 tgcatgtgcacctgcacacatgtgtgcatccatcacagacaccccaccatcaataacaaa 708
Query: 423 aacaacctgaaatctcatggatcttatactatgttgtgaagccggagtaaagagatcata 482
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 aacaacctgaaagctcatggatcttatactatgttgtgaagccggagtaaagagatcata 648
Query: 483 gtactgcacactgtaagcccactgagggggaaaaatgttaatagttttaatgatagtgat 542
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 647 gtactgcacactgtaagcccactgagggg-aaaaatgttaatagttttaatgatagtgat 589
Query: 543 tacctc 548
||||||
Sbjct: 588 tacctc 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 947
Length adjustment: 10
Effective length of query: 538
Effective length of database: 937
Effective search space: 504106
Effective search space used: 504106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_f10.g1 MSMg01no339_f10.g1 CHROMAT_FILE:
MSMg01no339_f10.g1 PHD_FILE: MSMg01no339_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:09 2005
(492 letters)
>mm_chr19_40467610_40468501
Length = 892
Score = 905 bits (468), Expect = 0.0
Identities = 486/492 (98%)
Strand = Plus / Plus
Query: 1 acaacacctcgccccacccgtccagaaccacaaggacgtccaccctcccagactccaggg 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 acaacacctcgccccacccgtccagaaccataaggacgtccaccctcccagactccagga 260
Query: 61 caacacacctgacttgctttcatgcttcggagattcctgggggctcacagggctgctgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacacacctgacttgctttcatgcttcggagattcctgggggctcacagggctgctgct 320
Query: 121 tggggttcccctgtaagaagacgaggcccgaagagtcactgttcctttcccagtgcagat 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggggttcccctgtaggaagacgaggcccgaagagtcactgttcctttcccagtgcagat 380
Query: 181 tttggtagggtccatgtctgaaaaggaaagatccaaacgggagggtgtgagccaagactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttggtagggtccatgtctgaaaaggaaagatccaaacgggagggtgtgagccaagactt 440
Query: 241 ctgagggagcaggatagtccagtccgtgagcagatggttatagcggaggactgagacgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgagggagcaggatagtccagtccgtgagcagatggttatagcggaggactgagacgaa 500
Query: 301 cctggttacatctaagcctactcttcaaacatctacgaccaatgagaattaattggtaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 cctggttacatctaagcctactcttcaaacatctacgaccaatgagaattaatcggtaca 560
Query: 361 gcgatacaccagcattgtgaaattagggagaagaggcaaggtaagctctgaggaaatgca 420
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 gcggtacaccagcattgtgaaattagggaaaagaggcaaggtaagctctgaggaaatgca 620
Query: 421 tgagttacaatgtcagctgaaaacatttaccagtggaaggaagctggctcattccttcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagttacaatgtcagctgaaaacatttaccagtggaaggaagctggctcattccttcta 680
Query: 481 cgaaatgaactt 492
||||||||||||
Sbjct: 681 cgaaatgaactt 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
