Query= MSMg01no340_e19.b1 MSMg01no340_e19.b1 CHROMAT_FILE:
MSMg01no340_e19.b1 PHD_FILE: MSMg01no340_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:18 2005
(560 letters)
>mm_chr19_41330631_41331590
Length = 960
Score = 627 bits (324), Expect = 0.0
Identities = 345/362 (95%), Gaps = 16/362 (4%)
Strand = Plus / Minus
Query: 215 cagctccctgtgccttcagctctaggtagatcccatgcctctggcctccatacacacaaa 274
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 960 cagctccctgtgccttcagctctaggtagatcccatgcctctggcttccatacacacaaa 901
Query: 275 cacataaacataatttaaaaataagtctgatggtgtctgattaatattactatgaatttt 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 cacataaacataatttaaaaataagtctgatggtgtctgattaatattactatgaatttt 841
Query: 335 aaatttatagagaaattaaaaaaaaaaaccctccgtaggttctactgctgggtcacaaaa 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 aaatttatagagaaattaaaaaaaaaaaccctccgtaggttctactgctgggtcacaaaa 781
Query: 395 aggt----------------gacctacatatggctgtatatcatattcaccgatggttag 438
|||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 aggtgatgttggctgccccagacctacatatggctgtatatcatattcaccgatggttag 721
Query: 439 aggtataattcaaagacacagggatgcagggtgagtctttcatgatggtggaacgtggct 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aggtataattcaaagacacagggatgcagggtgagtctttcatgatggtggaacgtggct 661
Query: 499 ttggacgtagttcttgtgttggctgcactgttgcttttcttttgctagttgtttgtctcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttggacgtagttcttgtgttggctgcactgttgcttttcttttgctagttgtttgtctcc 601
Query: 559 tg 560
||
Sbjct: 600 tg 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_e19.g1 MSMg01no340_e19.g1 CHROMAT_FILE:
MSMg01no340_e19.g1 PHD_FILE: MSMg01no340_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:18 2005
(554 letters)
>mm_chr19_41280524_41281477
Length = 954
Score = 1056 bits (546), Expect = 0.0
Identities = 552/554 (99%)
Strand = Plus / Plus
Query: 1 cctatgggaccggtcctgcggccgccacccgatgtgcactgctaacctgggaccaggatg 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctatgggaccgatcctgcggccgccacccgatgtgcactgctaacctgggaccaggatg 260
Query: 61 tcctcctggacttggaggagtactaaagcagtttcccgcagacattgtcctccccctccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctcctggacttggaggagtactaaagcagtttcccgcagacattgtcctccccctccc 320
Query: 121 gcgggagccggggacatctctcaggagcggagtggcccgccttgcccacccctcatttgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcgggagccggggacatctctcaggagcggagtggcccgccttgcccacccctcatttgc 380
Query: 181 atttcaaaggcaaacttctgcccgacttgcccggagactaggacagccagcggtggtacc 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttcaaaggcaaacttcagcccgacttgcccggagactaggacagccagcggtggtacc 440
Query: 241 taccagctttgcaggggtcgtggtaatgcagctgctgctccgtgccctcctcgccttcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taccagctttgcaggggtcgtggtaatgcagctgctgctccgtgccctcctcgccttcca 500
Query: 301 aggctccgtagtccaaggcgacattcgaatggtccccagtcacttcagcaccgcggggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggctccgtagtccaaggcgacattcgaatggtccccagtcacttcagcaccgcggggca 560
Query: 361 gcggtagcagcaacagtagcaccagggtgccaagagtggtcgcaaggggcatagtggcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcggtagcagcaacagtagcaccagggtgccaagagtggtcgcaaggggcatagtggcaa 620
Query: 421 ggggtcggcggggcccgagggacttaacctgcacagaaagctcggatccagagagacacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggggtcggcggggcccgagggacttaacctgcacagaaagctcggatccagagagacacc 680
Query: 481 acgtacagggtcggttgtggtggctgctgcttggctgccaggcaccggtagggtaccaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acgtacagggtcggttgtggtggctgctgcttggctgccaggcaccggtagggtaccaag 740
Query: 541 caagcccagtaagg 554
||||||||||||||
Sbjct: 741 caagcccagtaagg 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
