BAC Information

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BAC

Clone NameMSMg01-341I06
Chromosome19 (Build37)
Map Location 29,320,570 - 29,321,058
singlet/doubletsinglet
Overlap genenone
Upstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238
Downstream geneJak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341I06.T7 (MSMg01no341_i06.b1)MSMg01-341I06.TJ (MSMg01no341_i06.g1)
ACCAG455293AG455294
length764739
length of high quality
(start - end)
493 (44 - 536)357 (75 - 431)
definitionCHROMAT_FILE: MSMg01no341_i06.b1 PHD_FILE: MSMg01no341_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:47 2005CHROMAT_FILE: MSMg01no341_i06.g1 PHD_FILE: MSMg01no341_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCAAGAACAGCCAAATCTAAATGTCCTCAAACTGTTCCATTATTA
GAAAGTAAAACAACACGACCAAACTCACTCTATGAAATAAGCATGACTTT
TGTATCTAAAATAGAAGATGGCACAAGAACAAAAAAGAAAACTGTAACTT
CCATGATGAACATACATACAAAAATTGTCAATAAAGTTCTTTAAAGCTTA
AAGCTAGAGTAATAGCTCAGGCAGTTCTGTCTTTAGTCCTATTCCCAGAG
GATATAGTGCTCGCATCTTGCCTCAGGCATGGGCACACATGTGGCATGCA
TATACACATGGATAGAAATAATAAAAAAAAACATTTGTACACTCTTGAAA
ACTAATTTTTACAAATGTACATTGTGATTATACACTATGGTCAAGTTTGT
CTCATTCCAGGAAGGCAAGGTTGGTTCAATATACACAGATCAGTCAAGAC
AACGCAGAATATAATTATCATTTTATTAGATGTAGATAAGTCCTTTAACA
AAGTTCAACATCCCTTCATGATGAATAGCCTCAGAGAAACTCACTAGAGG
GACGTGTGTCCCCATGGCTAAAGCTACTTACGAATAACATACCCATTAAC
CCAAAGTATATTAAATGGAAAAAGATTGGAATCTGTTTCCTTCTAAATCT
GGAAAGAAAACAAAAATTGTTACCCCTCTGGAATCTCTATTCCCTCCAAT
GGAGCAAAGGCGTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTCTAATGCCTGTGTGACCCAGTTC
CAGGCCCAACTCCTGGCCCACCCTCGAGTCCAGTTTTAAAACCCCACCAC
TGCCTATCCTGCTGCCCTCTTTCCTGCTGACAACCCAGAAGTGCTCATCC
GTGACTGTCAGGAGATGAAAGATGACAACAGGTATGTGGGAGCTGCTGTG
GTTACTTTAACGGAAAGGATTTGGGTCCAAATTTGGTGCCTCAGTCAAGA
GAGCAGAATAGATCTGACCCAGACTCTCAGATGGGGAAAGTCCACTACCA
TATACACCAGCAGTTGCTATACGTTTATTAGCAGACACGTCCATGGCATG
ATCTGTAGAGAAAGAGGGTTTTTTGGTGTTGGCCAAAAGAACACTACACC
ATTTTTGTCCTCCTAGCGGCTATTTGGCTTCCTTCATGAAATGCTAGTCT
CCCGCTTGCTTGCCTGACTGTCTACACAACCTATGCCCCTTACCATCCTG
CCCCCATGTCTATCCTGCGGGTGAGCCCGCCCTTCCCCCTGCCCTAATCT
CCTCCGTTTCTCTCTCCCTCCTTACCCTTTTATTTAATTACCCCCCCCCT
TCCATTTATCTCTTTTCTTTCCCTTTTCATTCCCCTTCTTTCCCTCGTTA
TTTCCCATCTTTTTCTTTTTTTCCCCCATTCTTTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_i06.b1 MSMg01no341_i06.b1 CHROMAT_FILE:
MSMg01no341_i06.b1 PHD_FILE: MSMg01no341_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:47 2005
         (493 letters)



>mm_chr19_29320366_29321258
          Length = 893

 Score =  839 bits (434), Expect = 0.0
 Identities = 476/490 (97%), Gaps = 2/490 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcaagaacagccaaatctaaatgtcctcaaactgttccattattagaaagta 64
           ||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| |
Sbjct: 205 gaattctttcaagaaaagccaaatctaaaagtcctcaaactgttccataattagaaagaa 264

                                                                       
Query: 65  aaacaacacgaccaaactcactctatgaaataagcatgacttttgtatctaaaatagaag 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 aaacaacacgaccaaactcactctgtgaaataagcatgacttttgtatctaaaatagaag 324

                                                                       
Query: 125 atggcacaagaacaaaaaagaaaactgtaacttccatgatgaacatacatacaaaaattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggcacaagaacaaaaaagaaaactgtaacttccatgatgaacatacatacaaaaattg 384

                                                                       
Query: 185 tcaataaagttctttaaagcttaaagctagagt-aatagctcaggcagttctgtctttag 243
           ||||||||||||||||||||||||||||||| | |||||||||||||| |||| ||||||
Sbjct: 385 tcaataaagttctttaaagcttaaagctaga-tcaatagctcaggcagctctgcctttag 443

                                                                       
Query: 244 tcctattcccagaggatatagtgctcgcatcttgcctcaggcatgggcacacatgtggca 303
           ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 444 tcctattcccagaggatatagtgcttgcatcttgcctcaggcattggcacacatgtggca 503

                                                                       
Query: 304 tgcatatacacatggatagaaataataaaaaaaaacatttgtacactcttgaaaactaat 363
           |||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 504 tgcacattcacatggatagaaataataaaaaaacacatttgtacactcttgaaaactaat 563

                                                                       
Query: 364 ttttacaaatgtacattgtgattatacactatggtcaagtttgtctcattccaggaaggc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttttacaaatgtacattgtgattatacactatggtcaagtttgtctcattccaggaaggc 623

                                                                       
Query: 424 aaggttggttcaatatacacagatcagtcaagacaacgcagaatataattatcattttat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaggttggttcaatatacacagatcagtcaagacaacgcagaatataattatcattttat 683

                     
Query: 484 tagatgtaga 493
           ||||||||||
Sbjct: 684 tagatgtaga 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)