Query= MSMg01no341_i15.b1 MSMg01no341_i15.b1 CHROMAT_FILE:
MSMg01no341_i15.b1 PHD_FILE: MSMg01no341_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:49 2005
(475 letters)
>mm_chr19_46040366_46041241
Length = 876
Score = 866 bits (448), Expect = 0.0
Identities = 466/472 (98%), Gaps = 1/472 (0%)
Strand = Plus / Minus
Query: 5 gaattccttattgtgctctgcagtt-ttctaaaacattttaccccaagtagttagacttt 63
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 676 gaattccttattgtgctctgcagttgttctaaaacattttaccccaagtagttagacttt 617
Query: 64 gaagtgaagtcttttctttaatcttataaggcctggaccagggcaatgttacggttgatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gaagtgaagtcttttctttaatcttataaggcctggaccagggcaatgttacggttgatt 557
Query: 124 cctgttattcacattatcctttgtaacatgatacagtacaagatggggtctatgtgttac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cctgttattcacattatcctttgtaacatgatacagtacaagatggggtctatgtgttac 497
Query: 184 ttggtttgctttaatgtttaatgtttcttttcctcagaacttgatggagagtttggattc 243
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttgatttgctttaatgtttaatgtttcttttcctcagaacttgatggagagtttggattc 437
Query: 244 attactttgtgcagaaggttctgaaagtctgaagagtttatgcctgaaacttcttctttg 303
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 436 attactttgtgcagaaggttctgaaagtctgaagagtttatgtctgaaacttcttctttg 377
Query: 304 cttggtgactgtaagtgaccttgtatgtttgccaagggcagtcattacagctgaatcaag 363
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 376 cttggtgactgtaagtgaccttgtatgtttgtcaagggtagtcattacagctgaatcaag 317
Query: 364 cctagtcgaatgattcctcccaaaaataaaagaggaactctctctttgggtattatagca 423
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cctagtcgaatgattccttccaaaaataaaagaggaactctctctttgggtattatagca 257
Query: 424 ttccttttggtctgaacgtatagaaggaagttagttgtatgtagttttgcta 475
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttccttttggtctgaacgtatagaaggaagttagttgtatgtagttttgcta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 876
Length adjustment: 10
Effective length of query: 465
Effective length of database: 866
Effective search space: 402690
Effective search space used: 402690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_i15.g1 MSMg01no341_i15.g1 CHROMAT_FILE:
MSMg01no341_i15.g1 PHD_FILE: MSMg01no341_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:49 2005
(437 letters)
>mm_chr19_46001687_46002523
Length = 837
Score = 830 bits (429), Expect = 0.0
Identities = 435/437 (99%)
Strand = Plus / Plus
Query: 1 atttcgctttccttgtgctgcaagctgctgagaggccatacacaatgagaagggagagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttcgctttccttgtgctgcaagctgctgagaggccatacacaatgagaagggagagca 260
Query: 61 gcaacctggcctgctgcccagctaggagcagagaagttcacctaagaaggacttgacgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaacctggcctgctgcccagctaggagcagagaagttcacctaagaaggacttgacgct 320
Query: 121 ccaaataccaaactgaaaaaggaaatggaagcatggggaagggagatctagaacacatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaataccaaactgaaaaaggaaatggaagcatggggaagggagatctagaacacatcc 380
Query: 181 acggatacagacttggagaaagtaaatccacatgagggtggatttactcctgcctaacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acggatacagacttggagaaagtaaatccacatgagggtggatttactcctgcctaacct 440
Query: 241 tctcatcatcttcagcatccataacctcacaacattcaaggaggaagcaggtagagaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcatcatcttcagcatccataacctcacaacattcaaggaggaagcaggtagagaaaa 500
Query: 301 ggcaaactgcaaagaaagcaaagcaatgagaagacttcctgggacaaagtcaggaagcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcaaactgcaaagaaagcaaagcaatgagaagacttcctgggacaaagtcaggaagcac 560
Query: 361 aggttaggggtgaagtctagaacagctactgtaagccaagtaaaaaggttgactggagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggttaggggtgaagtctagaacagctactgtaagccaagtaaaaaggttgactggagag 620
Query: 421 ccacaccctttaactcc 437
|||||||| |||||||
Sbjct: 621 acacaccctgtaactcc 637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
