Query= MSMg01no343_g03.b1 MSMg01no343_g03.b1 CHROMAT_FILE:
MSMg01no343_g03.b1 PHD_FILE: MSMg01no343_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:12 2005
(358 letters)
>mm_chr19_53205745_53206502
Length = 758
Score = 646 bits (334), Expect = 0.0
Identities = 350/356 (98%), Gaps = 2/356 (0%)
Strand = Plus / Plus
Query: 5 gaattctgggggttcttgacctactgacccacagagtgtatatgcgcccttgtgctctac 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggggggacttgacctactgacccacagagtgtatatgcgcccttgtgctctac 264
Query: 65 tttctccaccatcaaaagatcattatcgaaccagacatttgcattttagtgaaaatttag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttctccaccatcaaaagatcattatcgaaccagacatttgcattttagtgaaaatttag 324
Query: 125 gtcagggtattactgctcccaggaaggacttgcttcgaaaactttctcccttattgtaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcagggtattactgctcccaggaaggacttgcttcgaaaactttctcccttattgtaga 384
Query: 185 ttgcagctgttcatatcaccctggctcctcttcctacgcagagacctgttttctctgaca 244
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 ttgcagctgttcatatcaccctggctcctcttcctacgcagagacctcttttctctgaca 444
Query: 245 cagttgtcccctctctgcagacactcaggggttgaccttagggcctgtgcatgcaagcaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagttgtcccctctctgcagacactcaggggttgaccttagggcctgtgcatgcaagcaa 504
Query: 305 gaactctaccattaaactgtttt--atttacccactttaaggtattttatttgggg 358
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 505 gtactctaccattaaactgttttttatttacccactttaaggtattttatttgggg 560
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space: 261401
Effective search space used: 261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no343_g03.g1 MSMg01no343_g03.g1 CHROMAT_FILE:
MSMg01no343_g03.g1 PHD_FILE: MSMg01no343_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:12 2005
(187 letters)
>mm_chr19_53359730_53360312
Length = 583
Score = 302 bits (156), Expect = 1e-86
Identities = 180/194 (92%), Gaps = 11/194 (5%)
Strand = Plus / Minus
Query: 1 aactttggttaaagcgagatgaatctgaccatgaactgggactgagaaagtggagaaact 60
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 368 aactttggttaaagctagatgaatctgaccatgaactggggctgagaaagtggagaaact 309
Query: 61 cttcttagtggctcctctaccttcctccaaagggtcctgaaggaccttttttttactttg 120
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 308 cttcttagtggctcctctaccttcctccaaagggtcctgaaggacc----ttttactttg 253
Query: 121 aggggattcataggccagtgcctgtaaagggttgggggatcaggggacta-------cct 173
||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 252 aggggattcatagaccagtgcctgtaaagggttgggggatcaggggactaccagtcgcct 193
Query: 174 tgtggtgtggttgt 187
||||||||||||||
Sbjct: 192 tgtggtgtggttgt 179
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 583
Length adjustment: 8
Effective length of query: 179
Effective length of database: 575
Effective search space: 102925
Effective search space used: 102925
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
