BAC Information

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BAC

Clone NameMSMg01-344H12
Chromosome19 (Build37)
Map Location 48,605,229 - 48,605,678
singlet/doubletsinglet
Overlap geneSorcs3
Upstream geneObfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576
Downstream geneLOC100042896
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344H12.T7 (MSMg01no344_h12.b1)MSMg01-344H12.TJ (MSMg01no344_h12.g1)
ACCAG457527AG457528
length791830
length of high quality
(start - end)		448 (57 - 504)50 (70 - 119)
definitionCHROMAT_FILE: MSMg01no344_h12.b1 PHD_FILE: MSMg01no344_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:40 2005CHROMAT_FILE: MSMg01no344_h12.g1 PHD_FILE: MSMg01no344_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
CGCGGAATTCTCTTTTCTCCAAAATCTGTTATATTTATTTATTTTATGTG
TTTGCATGCTAAGGGCACACCTGCTGTGGTGCGCAGGTAGAGGTCACGGG
CAGCATTGGCTCCCTTCCGGTTCTCTTCCGGTTCTCTTCCGGTTCTGAAG
ACCGAACTGAAGTCCTCAGGATCCTGTAGCAAATGCTCTCAGTTACTGAG
CCATCTCTTCATGTTTTCCTTGACTTACTTTAGTGGTTGATGCTTTGTTA
AGTGAGGCTTATGTTAAATCCTATAGGACAAGTGGAGATAGAAATTAGGT
TTAATGCACTTACACTATGTTGGGTTAGAAAGTTGGCAGTTGTAATCTTG
GCAAATAAAACAACATGCATATTGGCAGAGTGGTACCAGGTAAAAAACAT
ATGTGTAAGCACAAGTGTAGGTTGATGGTTCCATCTTTAATATGTATTTG
TAGNTTGCATATTATAGTCATAATAGAATCTAAACACACTTATATACCAC
TCTCAACACAGTTCCTCAACAAAGGTGTTATGAACATTCAATGATTTAAA
TTTTGGGCGGTTTAAACTTTATTGGAAAGCGGGGATTTGTGCCCTGTTAT
ATGTTTAAAAGCATAATTTTTTTTTCACCAATGGAATACCTCCAAACCCC
CTTTGGTGGCGGGAAAAATCCCCCCTTTTCGTTTCTCCTTTTCCTGGGGA
GGAGATAAACCCACTGTATTTGATGTCAAAAAAGTATTCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCGNGCGAATCAGAAACCTGAAAGCACATTTCGGAGGAAGGAA
GGGAGGGAGGGAGGGAGGGAGGTAGTCTCTCTTTTCNTCTCTTCTCCTTC
CTTTTCTTCTTCCTGCCGGTTCTTTCCCCCTTTTTTTTTTTTTCTCTTCT
CCTTTTTTCCCCTCCCTGCTCCCCTCCCCCCCCCGTTTGTCCCCTCTTTT
CCCCCCCTCTCCCTTGGTTTTTTCTGTCTTTTTTTCTCCCGCCTGTCCCG
CCTTGGCCGCCCTTTTTTTTTTCTTCTCTCCTCTCGCTTTTTTTCTCTCT
TTTTTTTTTTTTTCCTCCCCTCCTTTTTCCCCCCCCCTTCCTCCCTTTTC
TTCCCCCTCCCCCCTTTTTTGTCTTTTTTTCCTCCCCCCTTTTCTTTTTC
TCTTTCTCTCCGCCTTCTACCCCTTTTTTTTTTCTTTTTTCTCTTTCTTT
CTCTTCTCCTTCACCTTCATTCATTTTTCTTCTTCTCCTCCCCTCCTTCC
CTCCCTTCTTTCCTTCTCTCCTCTCTTTTTCTCTCCTCTCCTTTTCTTTT
TCCCTTCTTTCTTTTTTTCTTCTCCCTCCCTTCTCCCCCTTTCTTCCTCT
TCTTCTTTCCCCTTTCTTCCTCCTACTCCCCCCCTCCATCTCTCTTTTCC
CCTATCCTCTCCCCCTCTTCTTACTCCTCAATTTTCTTCCTTCTTTAATC
ATTATACTCCCACTTTTTTTCCATTTCTTCTCTTCTCCTTCTCCTCACCC
GTTTTTTATTCTTTCTCTTCCCTTCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_h12.b1 MSMg01no344_h12.b1 CHROMAT_FILE:
MSMg01no344_h12.b1 PHD_FILE: MSMg01no344_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:40 2005
         (448 letters)



>mm_chr19_48605032_48605879
          Length = 848

 Score =  774 bits (400), Expect = 0.0
 Identities = 437/450 (97%), Gaps = 3/450 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctcttttctccaaaa-tctgttatatttatttatttta--tgtgtttgcatgctaag 57
           ||||||| |||  ||||| ||||||||||||||||||||||  |||||||||||||||||
Sbjct: 198 attctctgttcagcaaaagtctgttatatttatttattttatgtgtgtttgcatgctaag 257

                                                                       
Query: 58  ggcacacctgctgtggtgcgcaggtagaggtcacgggcagcattggctcccttccggttc 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggcacacctgctgtggtgcgcaggtagaggtcacgggcagcattggctcccttccggttc 317

                                                                       
Query: 118 tcttccggttctcttccggttctgaagaccgaactgaagtcctcaggatcctgtagcaaa 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tcttccggttctcttccggttctgaagaccgaactgaagtcctcaggatcctgtagcaaa 377

                                                                       
Query: 178 tgctctcagttactgagccatctcttcatgttttccttgacttactttagtggttgatgc 237
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 378 tgctctcagttactgagccatctcttcatgttttccttgacttgctttagtggttgatgc 437

                                                                       
Query: 238 tttgttaagtgaggcttatgttaaatcctataggacaagtggagatagaaattaggttta 297
           |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 438 tttgttaagtgaggcttatgttaaatcctataagacaagtagagatagaaattaggttta 497

                                                                       
Query: 298 atgcacttacactatgttgggttagaaagttggcagttgtaatcttggcaaataaaacaa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atgcacttacactatgttgggttagaaagttggcagttgtaatcttggcaaataaaacaa 557

                                                                       
Query: 358 catgcatattggcagagtggtaccaggtaaaaaacatatgtgtaagcacaagtgtaggtt 417
           |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 558 catgcatactggcagagtggtaccaggtaaaaaacatatgtgtaagcacaagtataggtt 617

                                         
Query: 418 gatggttccatctttaatatgtatttgtag 447
           |||||||| |||||||||| ||||||||||
Sbjct: 618 gatggttctatctttaataggtatttgtag 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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