Query= MSMg01no345_i22.b1 MSMg01no345_i22.b1 CHROMAT_FILE:
MSMg01no345_i22.b1 PHD_FILE: MSMg01no345_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:02 2005
(440 letters)
>mm_chr19_17866882_17867722
Length = 841
Score = 791 bits (409), Expect = 0.0
Identities = 430/437 (98%), Gaps = 1/437 (0%)
Strand = Plus / Minus
Query: 5 gaattcaattcaaattcatgtgataacatgaggtggctttggcataagatatgggaaact 64
||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 641 gaattcatttcaaactcatgtgataacgtgaggtggctttggcataagatatgggaaact 582
Query: 65 aagaagatttggggacaaaataagagacagtaactatgacactgacatcaagttaagtaa 124
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aagaagatttggggacaaagtaagagacagtaactatgacactgacatcaagttaagtaa 522
Query: 125 ctgtccttattaattatgttggaggaagaagctgacctccataaaatcagttctccaaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ctgtccttattaattatgttggaggaagaagctgacctccataaaatcagttctccaaga 462
Query: 185 tgtgctgagtaatgaagaagcagaggtggccatggcagcatatcttacatcctc-ttgag 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 461 tgtgctgagtaatgaagaagcagaggtggccatggcagcatatcttacatcctctttgag 402
Query: 244 tttattatggtacataattcagtaattacgctattttgcctcttccccttcatgtgactt 303
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 401 tttattatggtacataattcagtaattacgctattttgcttcttccccttcatgtgactt 342
Query: 304 tggtttgccatggaactcattctcaaataaatcaataaacaatttcctgccagccagcat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tggtttgccatggaactcattctcaaataaatcaataaacaatttcctgccagccagcat 282
Query: 364 agcagcctcatatagaaactcttggaaaactatattccttgttaaaaaggatcttacatg 423
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 281 agcagcctcatatagaaactcttggaaaactatattccttgttaaaaaggctcttacatg 222
Query: 424 gatgtgcaattcaatgt 440
|||||||||||||||||
Sbjct: 221 gatgtgcaattcaatgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 841
Length adjustment: 9
Effective length of query: 431
Effective length of database: 832
Effective search space: 358592
Effective search space used: 358592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_i22.g1 MSMg01no345_i22.g1 CHROMAT_FILE:
MSMg01no345_i22.g1 PHD_FILE: MSMg01no345_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:02 2005
(512 letters)
>mm_chr19_17719828_17720740
Length = 913
Score = 938 bits (485), Expect = 0.0
Identities = 506/513 (98%), Gaps = 1/513 (0%)
Strand = Plus / Plus
Query: 1 aggtcctcattgtgcactaacatttttttt-caataatttgaagtaaattagttggaggg 59
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 aggtcctcattgtgcactaacatttttttttcaataatttgaagtaaattagttggaggg 260
Query: 60 aagctaagcaggaaggtgatgtgaccccaaagtgggaagaagagtaaaacaaagatatct 119
||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||
Sbjct: 261 aagctaagcaggaaggtgatgggaccccaaagtgggaagaacagtaaaacaaacatatct 320
Query: 120 cccttccttctctgctctaagtggaattccagaggggtcctttcaataggaagctactgt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccttccttctctgctctaagtggaattccagaggggtcctttcaataggaagctactgt 380
Query: 180 cagtgggagaaatgtgaggtgtaaattaccaggagcatctcacgtaaggttctccatgaa 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 cagtgggagaaatgtgaggtgtaaattaccaggagcatttcacgtaaggttctccatgaa 440
Query: 240 aagatggtagaatagcaggggatatttatgtctatatgcaccatgggacgtgcaacccat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagatggtagaatagcaggggatatttatgtctatatgcaccatgggacgtgcaacccat 500
Query: 300 aagaaaaacgatggttcagaactggagccacaaaaggtagccccacttatcacaagtggt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaaaaacgatggttcagaactggagccacaaaaggtagccccacttatcacaagtggt 560
Query: 360 gctggaaacgggccattaggatctgccattgtacctccaaggaaagtggcctccagtgtg 419
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccggaaacgggccattaggatctgccattgtacctccaaggaaagtggcctccagtgtg 620
Query: 420 cagaccacaacacagggtggatacgctctgacttcagactcccttgagaacatctcagaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 cagaccacaacacagggtggatacgctctgacttcagactcccttgagaacgtctcagaa 680
Query: 480 tttggtctccatcccggtggcagtttcgcatgc 512
|||||||||||||||||||||||||||||||||
Sbjct: 681 tttggtctccatcccggtggcagtttcgcatgc 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 913
Length adjustment: 10
Effective length of query: 502
Effective length of database: 903
Effective search space: 453306
Effective search space used: 453306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
