Query= MSMg01no345_j21.b1 MSMg01no345_j21.b1 CHROMAT_FILE:
MSMg01no345_j21.b1 PHD_FILE: MSMg01no345_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:06 2005
(536 letters)
>mm_chr19_18210187_18211122
Length = 936
Score = 920 bits (476), Expect = 0.0
Identities = 515/528 (97%)
Strand = Plus / Plus
Query: 5 gaattcaactcaattatgcaagcagatctgagtatgtcagtatgtgaagccaatttacct 64
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattcaactcaattaagcaagcagatctgagtatgtcagtatgtgaggccaatttacct 264
Query: 65 cttttttccagttggttgatttgagggcttcttaagcaaaataacagataaaagatctat 124
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 ctttgttccagttggttgatttgagggcttcttaagcaaaataacagctaaaagatctat 324
Query: 125 ctgggttttagatatcagggtataatactaatgtttatgaaaactgaatattataagcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgggttttagatatcagggtataatactaatgtttatgaaaactgaatattataagcta 384
Query: 185 tacatcctacttggattgcaaactagcctttaaaaaatctgtacttaaattgttgcatcc 244
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 tacatcctacttggattgcaaactagcctttagaaaatctgtacttaaattgttgcatcc 444
Query: 245 tctaaatttttgtggccctttcccaaagcccagctaccctctcctgtgttgctgcttctc 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 tctaaatttttgtggccctttcccaaagcccagccaccctctcctgtgttgctgcttctc 504
Query: 305 ggtttctgagacaaacttcaaattctccttgtctccaatttgataaactcagaaatgtag 364
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 gttttctgagacaaacttcaaattctccttgtctccaatttgataacctcagaaatgtag 564
Query: 365 ccatgtaaactctaactaatgggtgactccttggtaacaaagaagagggcagattgcaca 424
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccatgtaaactctaaataatgggtgactccttggtaacaaagaagagggcagattgcaca 624
Query: 425 cagctgtatttgcctattgtaatttcttaacatgttatttagtatttcatcaaaacatga 484
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 625 cagctgtatttgcctattataatttcttaacatgttatttagtttttcatcaaaacatga 684
Query: 485 gagaaaaattgtcatctgtgaaatgatggaagaaaaggagtataagga 532
||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 685 gagaaaatttgtcatctgtgaaatgatggaagaaaaggagcataagga 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_j21.g1 MSMg01no345_j21.g1 CHROMAT_FILE:
MSMg01no345_j21.g1 PHD_FILE: MSMg01no345_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:06 2005
(500 letters)
>mm_chr19_18391113_18392006
Length = 894
Score = 913 bits (472), Expect = 0.0
Identities = 491/502 (97%), Gaps = 10/502 (1%)
Strand = Plus / Minus
Query: 1 tttttagtgtttagtaccaagtattatgaagataagtaacattaaaaataaatacaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tttttagtgtttagtaccaagtattatgaagataagtaacattaaaaataaatacaataa 635
Query: 61 accaggccaaaaggcaaagcacaagactgtgctgattaaacataaatgtgtttcattctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 accaggccaaaaggcaaagcacaagactgtgctgattaaacataaatgtgtttcattctt 575
Query: 121 atgagaaaggacgcattatataaatgcctcaactgagatttttaaacagctttaaaattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 atgagaaaggacgcattatataaatgcctcaactgagatttttaaacagctttaaaattt 515
Query: 181 ttatcagcagtgatatatcagaataaatcaaagttttatgctcaactgttattaaatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ttatcagcagtgatatatcagaataaatcaaagttttatgctcaactgttattaaatttt 455
Query: 241 attacaaatggctgtactgtatttcagggcaggacttttttttatcaggttttgagttga 300
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 454 attacaaatggctgtactgtatttcagggcaggac--ttttttatcaggttttgagttga 397
Query: 301 tgcacgtcaacctttctctttgtctgccttagggtgatgtctactgaacgggtcttgttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgcacgtcaacctttctctttgtctgccttagggtgatgtctactgaacgggtcttgttc 337
Query: 361 cctggtttgttaagatatctctcacaaaggggcacaaac--ctcttttaaggttttagca 418
|||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 336 cctggtttgttaagatatctctcacaaagggg------cggctcttttaaggttttagca 283
Query: 419 gagccgacttttgggaaatgcacaagtggtttttcttttttcttgttctacctggtcatg 478
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 282 gagccgacttttgggaaatgcacaagtggttttccttttttcttgttctacctggtcatg 223
Query: 479 tagacacaactttggcttttag 500
||||||||||||||||||||||
Sbjct: 222 tagacacaactttggcttttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 894
Length adjustment: 10
Effective length of query: 490
Effective length of database: 884
Effective search space: 433160
Effective search space used: 433160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
