Query= MSMg01no345_o02.b1 MSMg01no345_o02.b1 CHROMAT_FILE:
MSMg01no345_o02.b1 PHD_FILE: MSMg01no345_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:26 2005
(584 letters)
>mm_chr19_58396165_58397148
Length = 984
Score = 1023 bits (529), Expect = 0.0
Identities = 568/581 (97%), Gaps = 2/581 (0%)
Strand = Plus / Minus
Query: 5 gaattccaatgtgtttcgtcttggaataataggggcacattttatactg-cctggcctaa 63
||||||||||||| || |||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct: 784 gaattccaatgtggttggtcttggaataataggggcaaattttatactgccct-gcctaa 726
Query: 64 acactagaataggtaaccacataaacaccatgagtcagtccatggtaccaaattatcagc 123
|||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 725 acaccagaataggtaaccgcataaacactatgagtcagtccatggtaccaaattatcagc 666
Query: 124 gcacagttagagcttaagctgtcattggcctacccaaagcttttatgtggagaaaatgta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 665 gcacagttagagcttaagctgtcattggcctacccaaagcttttatgtggagaaaattta 606
Query: 184 tcttgctaatacgctgtgatttccaggatagcattttattttttggcagtaagatctggt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tcttgctaatacgctgtgatttccaggatagcattttattttttggcagtaagatctggt 546
Query: 244 ctagcagaatcacatgggaggaattaaagattcccgtggatcaaccagatccacccacaa 303
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 545 ctagcagaatcacatgggaggaattaaagattctcgtggatcacccagatccacccacaa 486
Query: 304 agccagactgggagcaaaatccttgctccttgagaagattcttatgttcaaagaaaccga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agccagactgggagcaaaatccttgctccttgagaagattcttatgttcaaagaaaccga 426
Query: 364 agcattactggtttgatggcctgtcattccgttctgccaaccagagcggtgatgggggaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agcattactggtttgatggcctgtcattccgttctgccaaccagagcggtgatgggggaa 366
Query: 424 ccccagctcagcacacctcctccagcaaaatcatcagactctgagtcttagactcacagg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ccccagctcagcacacctcctccagcaaaatcatcagactctgagtcttagactcacagg 306
Query: 484 agagcatcccgctagaacaggaatccagaccactgggtctgtccattcccgtccttctga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agagcatcccgctagaacaggaatccagaccactgggtctgtccattcccgtccttctga 246
Query: 544 gggagctgctgacttcatcacgagtttatcctctgttgaag 584
||||||||||||||||||| ||||||||||||||||||||
Sbjct: 245 gggagctgctgacttcatcgtgagtttatcctctgttgaag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_o02.g1 MSMg01no345_o02.g1 CHROMAT_FILE:
MSMg01no345_o02.g1 PHD_FILE: MSMg01no345_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:26 2005
(342 letters)
>mm_chr19_58220273_58221013
Length = 741
Score = 627 bits (324), Expect = 0.0
Identities = 333/336 (99%), Gaps = 1/336 (0%)
Strand = Plus / Plus
Query: 5 tccacatggaggggtacccaccccctttttttatcctccatacttgcccccatcagccca 64
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 tccacatggaggggtacccaccccc-ttttttatcctccatacttgcccccatcagccca 263
Query: 65 gagaagatccctgctgctcctgagaccacacaaggcattgcaatctttgcctttcagata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagaagatccctgctgctcctgagaccacacaaggcattgcaatctttgcctttcagata 323
Query: 125 tgctcagaaatggcagatgtctgggtattgctaagttattgcataattaagtctgatatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgctcagaaatggcagatgtctgggtattgctaagttattgcataattaagtctgatatg 383
Query: 185 agtaagggaattcaaacaaacatttctagaagaagaataggtgtgttctgtttgcctggg 244
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtgagggaattcaaacaaacatttctagaagaagaataggtgtgttctgtttgcctggg 443
Query: 245 attttctttagaacagctaaagtcgcccagaggaataattaatcctgtggctgatggtag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attttctttagaacagctaaagtcgcccagaggaataattaatcctgtggctgatggtag 503
Query: 305 cagcagtatagggagccaaggagcccccttcacttg 340
|||||||| |||||||||||||||||||||||||||
Sbjct: 504 cagcagtacagggagccaaggagcccccttcacttg 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 741
Length adjustment: 9
Effective length of query: 333
Effective length of database: 732
Effective search space: 243756
Effective search space used: 243756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
