BAC Information

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BAC

Clone NameMSMg01-347A01
Chromosome19 (Build37)
Map Location 10,781,474 - 10,781,933
singlet/doubletsinglet
Overlap geneVps37c
Upstream gene6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik
Downstream geneCd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347A01.T7 (MSMg01no347_a01.b1)MSMg01-347A01.TJ (MSMg01no347_a01.g1)
ACCAG459453AG459454
length1,435753
length of high quality
(start - end)		---526 (74 - 599)
definitionCHROMAT_FILE: MSMg01no347_a01.b1 PHD_FILE: MSMg01no347_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:50 2005CHROMAT_FILE: MSMg01no347_a01.g1 PHD_FILE: MSMg01no347_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCAGTGAGCGNTCCNTGAGNTAGNTCACGGNNNNNNNNGNGGNNNN
NNNNNTTCTCCGAAAAGAAGAGGGGGNNNNNGNGNGACACCNANCCGATT
TTTCTCTCACAGAAGAAGACAGNGGACCCTATTGAGACCCNCNTCTATTA
CTATTTTTCTTCGTTTTTGTTATTATTTCTATTCACGTGTTCGTCTCGCA
CCGTAATGAACAAAACTGTGTGTATGTACTATATATCCACAANGAGACGT
GTGAAACACTGCACAACGGCGCTAAAAGATGCGCGCGTGTGACCGCGTGC
GCCATTTTCTCCTCTTNTCGTTATAGGCGCAGCAAGCTTACCGCGCGCTT
CATATCCTACGCCTCAGATCTGNCTATGCGCTTGAGCAGTACTATGCCTC
CCCCCCGTATGATACCAATATACTACCACCAACAACCAGAGATATTGCTA
TAGATCGCAGAAAGAGTATTGACGAGGGAGTGTGGTGGACGGGAAAGATG
GAAACGTTGATGCATTAGCGGTGCGGGGACAGAAATATGAATCAATATCG
GTGGATAGTTTAGAGTATAAGAGACGTGGCTATGTGGAGTGGTCGTGAGT
AGGCTAGAGGAGCGGCTGTAGTAGGCGTTAAGATAGACATACGACGCATG
ATGCCATTATCGATATCAGAGTGTGTCGGTATGCGATTGTAGTTCAGGCT
CTGTGATGACATTGATACGAGATACACCTACGCGCCTGCGAGTCTACAAT
ATATCTTGCTACTATCACATCGAGCGTTGAATCGACTCGTATGCACCACC
ACGATTATTGAAGAGTATGGCGATGCGTCGGATGATAGCACATGGTGACA
TGACATGAGACTGGATAGAATGTCACCACCCTGCTCTACCACACGCGCTA
TGTATCGCACGATATACCCTACNTCTAACATATGCGCCACATCGCTACCA
GTGTGTCACGGTTATGCGCATGCTATGACTGTGTTGACGTCACTTAGGTG
CTCGCGCGGATTGTCGCGCGCTTANGNGGAGACCGGNATATGAGATCTGT
GGAGTGAGGGCTATANGCGCGCAGACGATGTACGNTCTGNCGCACGATGT
TGTGATGCGCGTGTCGGCGTCGGCGACTTCTTGTTAAGAGGCGACAAGTG
TCTCGTTATCACCATATTCACATTACCTCGATCTCGATGACGCCGCGGCG
CATGTGACAGTCCTACTGTTGCATGTAGGCAGGAGATATAATAGGCAGGG
TAGTAAGAGCCGCTACAATATATATGGGAGAAAAGCGCGGAGATATTACG
ATTACGACGTGCTCGTATGACGCAGCACGTATACTCCAGATGTGTGTGCT
GATGTATAGATTCGCACTGACANCAACGTATATCCATTGTCTCTGACGGA
TGTTCTCACTCTCAATTATAGTGCTCTTCTAGTAN

CCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGAGCACACGTCACGTCTGCTCATC
AGGAAAAAGGGCACACGTGAGTGACCATCAGAGGAGCCTACTGTGCTCCC
GCCCCTCCCTCAAACAGATGCTTCCAGGCCAAGGACCAGCTGCAGCTGCT
CTGGGGGTACCTATGGGTATTTCTAGCTGAGTGGCCACATCGAGCCACCT
GACCTCCAGCTCACAGGAAGGTCACAGGAAATAATGACAGTGAGGGCCGA
GTCAAGCTCTGTAAAGATAGCAGGGTGGTGCTTATTCCTGTAAGGGCCCT
GTGATTGGAAGCTGAGAGGTGGGGTGCTGGCTGCAGTGGAGAACACTATG
AAACATGAGTGAGCATATCACTGTGGGGGAAGATGCCCCCCCTCTCCCTA
GTGCATGAGGGAGCTGTCTCTAGGCCCACGCTGGAACGCTATGAAGACTC
CTGGGCCAGTTGGGTCCCTGGCTGTCCTAGTCCAAGGTGGACCCAGCACT
CCCTATCATTCCCAGGGCTCCTAGAGGACCCAGGCCCTGGCTTGAAACCT
CAGGGCTGCCCTAGTACAAGCCAAGGTAAAATTCACAGCACCAGGTGAAT
CCTGGCTCAAGTTCCTGCTAAGCATGAATCCTTGACAAGCATTTGTCAAG
CTGGGCGGGATGGTTCATTGGGAAAAGGCCTTGTCCATAAGCTGGACACA
TGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_a01.g1 MSMg01no347_a01.g1 CHROMAT_FILE:
MSMg01no347_a01.g1 PHD_FILE: MSMg01no347_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:50 2005
         (526 letters)



>mm_chr19_10781008_10781933
          Length = 926

 Score =  855 bits (442), Expect = 0.0
 Identities = 459/472 (97%), Gaps = 12/472 (2%)
 Strand = Plus / Minus

                                                                       
Query: 55  tcagaggagcctactgtgctcccgcccctccctcaaacagatgcttccaggccaaggacc 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 tcagaggagcctactgtgctcccgcccctccctcaaacagatgcttccaggccaaggacc 867

                                                                       
Query: 115 agctgcagctgctctgggggtacctatgggtatttctagctgagtggccacatcgagcca 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 866 agctgcagctgctctgggggtacctatgggtatttctagctgagtggccacatcgagtca 807

                                                                       
Query: 175 cctgacctccagctcacaggaaggtcacaggaaataatgacagtgagggccgagtcaagc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 cctgacctccagctcacaggaaggtcacaggaaataatgacagtgagggccgagtcaagc 747

                                                                       
Query: 235 tctgtaaagatagcagggtggtgcttattcctgtaagggccctgtgattggaagctgaga 294
           ||||||||||||||||||||            ||||||||||||||||||||||||||||
Sbjct: 746 tctgtaaagatagcagggtg------------gtaagggccctgtgattggaagctgaga 699

                                                                       
Query: 295 ggtggggtgctggctgcagtggagaacactatgaaacatgagtgagcatatcactgtggg 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ggtggggtgctggctgcagtggagaacactatgaaacatgagtgagcatatcactgtggg 639

                                                                       
Query: 355 ggaagatgccccccctctccctagtgcatgagggagctgtctctaggcccacgctggaac 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ggaagatgccccccctctccctagtgcatgagggagctgtctctaggcccacgctggaac 579

                                                                       
Query: 415 gctatgaagactcctgggccagttgggtccctggctgtcctagtccaaggtggacccagc 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gctatgaagactcctgggccagttgggtccctggctgtcctagtccaaggtggacccagc 519

                                                               
Query: 475 actccctatcattcccagggctcctagaggacccaggccctggcttgaaacc 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 actccctatcattcccagggctcctagaggacccaggccctggcttgaaacc 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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