BAC Information

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BAC

Clone NameMSMg01-348D22
Chromosome19 (Build37)
Map Location 37,070,304 - 37,070,859
singlet/doubletsinglet
Overlap geneBtaf1
Upstream geneHtr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3
Downstream geneCpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348D22.T7 (MSMg01no348_d22.b1)MSMg01-348D22.TJ (MSMg01no348_d22.g1)
ACCAG460389AG460390
length7451,000
length of high quality
(start - end)		572 (25 - 596)---
definitionCHROMAT_FILE: MSMg01no348_d22.b1 PHD_FILE: MSMg01no348_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:28 2005CHROMAT_FILE: MSMg01no348_d22.g1 PHD_FILE: MSMg01no348_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCAGAG
ATCTGCCTGCGTCTGCTTCCCAAGCTGGGATTAAAGACTAAGGTGTGAGC
CACCACACTCTTCTTAATACAATTTCAATGGTGTAAGTGCAGCTGCTATT
ATAGTGTAAATCTGTAAAGTGTTCCAATTGGGCTACTGAGCACTGTGTTT
ACTCTGTAAACAAGAATGCTACCACATACTTTATGATGTAGATCTGATAT
GTGACTCAGAAAAAAAAGATGAGCACCTAACTCAAAATTTAGTAAGAGCT
TTGTCAGCATCTCTTCTTTTGGGGCACATTCATTCCTTTACCATTCAGGC
TAAATGGGTCTTATCGATCCTAGATCCCCATAACAAATAAAAAGATAAAG
ATGAAACAGCAGAACCAGGTTGACCTATTCACAAGATTATATCCTCTGAC
AGCCAGTCTATCATGTCCAGACTGAGATCTCTGATGAAAGAGTAAAGAAC
TACTTAGTATGGTCCTGGAGCTAGGAGAATATGGTTGGTGACTACCCAAG
GTCATTTACCACCAACTCTAGAATAAAGTAAAGATCAACTCAACTTTGGG
AAAGAAAAACAAGAAAGAGTCCTGTTGCTTCTAAAGCAATAACCCACCCT
TAAAATTCTCANGGGAGTGAGCTGATTCCCTGTTAGGTAGCTAATAAGCA
GAATTTCTATCATGTGCAGATGCGTGAATACTAATTGACACTACN

TCGTATACACCCTTCGCCGCCCGGCCGTGGATTCGTNATAGGAGAGGAGA
GGNTATAATAAGGGCGACAGGGAAATACATATACCACTTGCGTTCCGCCG
ACGGGCTAGCGCCTGTTGATTAGAGCGGCTGCGCAGGGTAATCATTTATT
CGTGCAGCGCAAGCGTAAGAGAGAGAATAAAGAACAAAAATTGAGAGAGA
GTCCGGCGTCGCGCGTATAGCACCCCCCGGGCGCGCGCCCGCCGTCGCGC
TACCACGCGACGCAGTGCTACATACATTACTACGCTCAATCTTCGTCCCT
TCGTATATACCTACTGCCGGTAGGAACGCTTCGCGGTCACCACTACCCCC
CGCGTTCTCTCTTTCCGCGTCCCTCGTATTAAATATTTCCGCGTCGAGAT
ATTCGCCGGTCTCATTTGCTTGCGCCACATTGCGTTCACCATATTTAACA
TTTTCGCGTGTCGCACGCACTAATATCGACAACGCCTATTTTCTTCCCTA
AACTACCTACACCGAAACGCAATATACAAAACCCTCCGCTTGAATAAAAC
GCACAGACAGAACAATTTTCCGCGGTTCTCGCCGCTCGCGATTTTATCCT
AGCCGACTTATTTATCCTATTACAGCAGTCCACTTCCCTCAGTCGCAGCA
GTGAACGCGCGTCGCGAGAGGGTGAGGGAAAAATAGATACTATCACCATT
TTCAATTCCCTGCTACGGCCCCCGCATTATGTTCCTACCGTTTCTAACCC
CTCATTGTTATGTATCCGTCTATATTCACCCGACACCCGCACCAAGAGCA
TAGATATTCGCGCGCTGATCATTACCCCTGCTTTATTTCCGTATCCCTTC
CGTAATATGGCGCCATATCTTATTTATCCGCTATCCGACATGTATTATAC
GCGTATATAAGATATACATGCTTCTCCCGGACAACAATAAGATATTAATA
CCGCCCTATATAAGGATAGGTGGGAGACAACGACACTTACTGTCTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_d22.b1 MSMg01no348_d22.b1 CHROMAT_FILE:
MSMg01no348_d22.b1 PHD_FILE: MSMg01no348_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:28 2005
         (572 letters)



>mm_chr19_37070022_37070993
          Length = 972

 Score = 1044 bits (540), Expect = 0.0
 Identities = 552/556 (99%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattcagagatctgcctgcgtctgcttcccaagctgggattaaagactaaggtgtgagc 76
           ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 838 gaattcagagatcagcctgcgtctgcttcccaagctgggattaaaggctaaggtgtgagc 779

                                                                       
Query: 77  caccacactcttcttaatacaatttcaatggtgtaagtgcagctgctattatagtgtaaa 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 caccacactcttcttaatacaatttcaatggtgtaagtgcagctgctattatagtgtaaa 719

                                                                       
Query: 137 tctgtaaagtgttccaattgggctactgagcactgtgtttactctgtaaacaagaatgct 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tctgtaaagtgttccaattgggctactgagcactgtgtttactctgtaaacaagaatgct 659

                                                                       
Query: 197 accacatactttatgatgtagatctgatatgtgactcagaaaaaaaagatgagcacctaa 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 accacatactttatgatgtagatctgatatgtgactcagaaaaaaaagatgagcacctaa 599

                                                                       
Query: 257 ctcaaaatttagtaagagctttgtcagcatctcttcttttggggcacattcattccttta 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ctcaaaatttagtaagagctttgtcagcatctcttcttttggggcacattcattccttta 539

                                                                       
Query: 317 ccattcaggctaaatgggtcttatcgatcctagatccccataacaaataaaaagataaag 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ccattcaggctaaatgggtcttatcgatcctagatccccataacaaataaaaagataaag 479

                                                                       
Query: 377 atgaaacagcagaaccaggttgacctattcacaagattatatcctctgacagccagtcta 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atgaaacagcagaaccaggttgacctattcacaagattatatcctctgacagccagtcta 419

                                                                       
Query: 437 tcatgtccagactgagatctctgatgaaagagtaaagaactacttagtatggtcctggag 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tcatgtccagactgagatctctgatgaaagagtaaagaactacttagtatggtcctggag 359

                                                                       
Query: 497 ctaggagaatatggttggtgactacccaaggtcatttaccaccaactctagaataaagta 556
           |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ctaggagagtatggttggcgactacccaaggtcatttaccaccaactctagaataaagta 299

                           
Query: 557 aagatcaactcaactt 572
           ||||||||||||||||
Sbjct: 298 aagatcaactcaactt 283


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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