BAC Information

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BAC

Clone NameMSMg01-350J19
Chromosome19 (Build37)
Map Location 11,682,075 - 11,682,525
singlet/doubletsinglet
Overlap genenone
Upstream geneDdb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d
Downstream geneMs4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350J19.T7 (MSMg01no350_j19.b1)MSMg01-350J19.TJ (MSMg01no350_j19.g1)
ACCAG462183AG462184
length787776
length of high quality
(start - end)		479 (48 - 526)451 (81 - 531)
definitionCHROMAT_FILE: MSMg01no350_j19.b1 PHD_FILE: MSMg01no350_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:35 2005CHROMAT_FILE: MSMg01no350_j19.g1 PHD_FILE: MSMg01no350_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTATCCCCTTCACAGCAGAGCCAGAATCCTTCACCCTATTCTT
CAATAAGAGTCTCCAAGCTCAATCCACTGTTTAGCTGTGGGTATCTGCAT
CTGTCTGAGTCAGTTGCTGAGTGGAACTGCTCAGAGGACAGCCATGCTAG
ACTCATGTCTCTAAGCATAACAGAGTATCATTAATAGTGTTAGGGATTGG
TGCTTGCCAGTTAGGCCAGTTATTGGTTGGCCATTCTGTCAGTTTCTGCT
CTGGAGCCAAATTTTGTTTCAATAAAATATGTTCATACTGATGAAAACCT
TAAATCCGTATCAAAATAAATTCTGTACCAAGGTAAGAAATTATAACTTC
ATCTTTGCATCAATTATAAGGATTTCTACCAATTAATATTATGGCTAGAC
CATCAATTCCACCCATGTCCTCCCTGTTCAAAATTATGACCATTCCCCGA
TTATCCCTTAAATAACTTTTCTATAATTTGTAAAATAACCATCACCAGAT
CCCCAAACCCGGGAACTGGGTTGACAACTCTCCTTAACTTCTTCTGTTTG
AACAGGAGACACAAAACTCCTTTATAGGGGAGGAAAAAGGTTGGAAAATT
TTAAAATTTTGCGCTCCTTTTATAAAACCCCCCCCGCCATCTGTTTTTAA
ACACTCCCCACCCACAAAGGTTCCCCCTTCACTATTATTTCTTTGCCCTC
CTTTTTACTTTTTTGTTATTCTATGCCCCTGCATTTG

NTTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGCTAAGACATTGACCATC
TCACAGAAGTGGTATCACATTTTATACACAGGTGCGCCCCACACAAATGA
AGAGAAAATATTAGTGAAGAGTGTTGAATGACATCCTGACATTAATGGTG
GCACAATGACTAAAGAAAAGCTGCTCTTTCCACAATCCCTGTTTCAAAAG
ATGCCACCTCATAGAACATTCCATGATGTTGAGAATTCTAGAGGTTTCTA
GATTTTACTCCAACATCTTGTTACAATAAATTTCTCTGGGATACTGAAAA
CACATCAGGAATCCATCTTCTCTTTCAGTCTGGGCACATCTGGCCATTAT
TTTACTATGAGACCTGCAGAAGATTATTCTGGCTTGAAATCAGGAAATGG
GATGAAGTAGATGGTGCAAAAAGTATGCCAATTGTATCCTACAGAGTTTG
ATGACTTCTGAGTGAAGTGGCTAGTAAGCCCCAGAGCTGCTCACTAACCT
TATGACCCCTGGATCCAGAGGGACAGGGCCCAGTCCTAACCCATAATAAA
ATAATAGTTTCTGGGGGGCCCCTTGCGTGTCACCAAGGGGCACAAAAGAT
AAAAGTCTAATCTCAACTAGGGCCCTTTCAAGGTCTGTCTTCCCGTTCTT
TACCTTTAATTTTTTTTAATTAAACACCCTAATTTTTCTTTAAAAATTTC
TTTCATATGTTACCTCCTTCTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_j19.g1 MSMg01no350_j19.g1 CHROMAT_FILE:
MSMg01no350_j19.g1 PHD_FILE: MSMg01no350_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:36 2005
         (451 letters)



>mm_chr19_11681875_11682725
          Length = 851

 Score =  841 bits (435), Expect = 0.0
 Identities = 447/451 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggctaagacattgaccatctcacagaagtggtatcacattttatacacaggtgcgcccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 651 tggctaagacattgaccatctcacagaagtggtatcacattttatacacaggtgtgcccc 592

                                                                       
Query: 61  acacaaatgaagagaaaatattagtgaagagtgttgaatgacatcctgacattaatggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 acacaaatgaagagaaaatattagtgaagagtgttgaatgacatcctgacattaatggtg 532

                                                                       
Query: 121 gcacaatgactaaagaaaagctgctctttccacaatccctgtttcaaaagatgccacctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 531 gcacaatgactaaagaaaagctgctctttccacaatccctgtttcaaaatatgccacctc 472

                                                                       
Query: 181 atagaacattccatgatgttgagaattctagaggtttctagattttactccaacatcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 atagaacattccatgatgttgagaattctagaggtttctagattttactccaacatcttg 412

                                                                       
Query: 241 ttacaataaatttctctgggatactgaaaacacatcaggaatccatcttctctttcagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttacaataaatttctctgggatactgaaaacacatcaggaatccatcttctctttcagtc 352

                                                                       
Query: 301 tgggcacatctggccattattttactatgagacctgcagaagattattctggcttgaaat 360
           |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 351 tgggcacatctggccattgttttactatgagacctgcagaagattcttctggcttgaaat 292

                                                                       
Query: 361 caggaaatgggatgaagtagatggtgcaaaaagtatgccaattgtatcctacagagtttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 caggaaatgggatgaagtagatggtgcaaaaagtatgccaattgtatcctacagagtttg 232

                                          
Query: 421 atgacttctgagtgaagtggctagtaagccc 451
           |||||||||||||||||||||||||||||||
Sbjct: 231 atgacttctgagtgaagtggctagtaagccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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