BAC Information

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BAC

Clone NameMSMg01-351B06
Chromosome19 (Build37)
Map Location 46,274,294 - 46,274,802
singlet/doubletsinglet
Overlap geneGbf1
Upstream geneLbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3
Downstream geneLOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351B06.T7 (MSMg01no351_b06.b1)MSMg01-351B06.TJ (MSMg01no351_b06.g1)
ACCAG462536AG462537
length729787
length of high quality
(start - end)		515 (52 - 566)132 (84 - 215)
definitionCHROMAT_FILE: MSMg01no351_b06.b1 PHD_FILE: MSMg01no351_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:14 2005CHROMAT_FILE: MSMg01no351_b06.g1 PHD_FILE: MSMg01no351_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCGCGCNTTCAATATTTGGGGGCGCTATACGACTCCTATATTCCGAGG
ATCCGCGGAATTCTTTTTCACTTGCTTTGATTTTGAGACAGGGTTTCTCT
GTGTAGCTCTCTGGCTGTCCTTGAACTTGATCTGTAGACCAGGCTAGCCT
CAAATCAAAGATCCACCTGTCTCTGACTCCTGAGTGCTGGGATTAAAGGC
ATGCACCACCACTATCAGGCTTAAAAAAATTAGGAGGTTCTTTAGGGAAA
CAGAGTATGGTTCTAAAAGTTATCAAGTTCCGAAGTAACTTCAAGTTCTC
CACACAAATGAATTTTATAAGGTCATTTCTTTCTCTTTGACATCCATTGG
ATCTAAACAGGAAAATATATAAGTATTTAGGAGGAAGATAGGAAGGTTAA
AAAAAAAAAGGACTCTAGAGACTAGAATTGTAGAAAGACTATTCAAATCC
ATCCTCAAGACTCAATCTACTTTCTTCTGGTGCTTTCTATATATCTTGCT
TCAAATGATATTTACTCTTGTGAACCTACGTCAGTACAGAACTAGCTCTT
TGATAGCCAGGTCTAGTTTAGTAGGTGTTACAGATTGGCTCTGTAATTCT
CAAACCCTCCTATGTGATGAAGACTTGGTCCTCAGCTGCTGGTGTTAATG
AGAGGTACCTGGACCACAAGGTAGCGAACCTGACCAATGGATTAGTCCCC
CTACCAGGTTATCACTTACATTGGCTGGG

NNNCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGGACTGCCAGCCTG
GCCACATCAGTGAAGCTCAGGGTCACTGAGGGCCACACGTTTAGTCCTCA
GTTCTGGGGAAAGGGGGAAGGGGAAGGGAAGGAGACAGGCGGGGGAGGGA
GGGAGGGAGGGAGAGGNTTCCTTTTCTCTTTTCTTCTTTTCCCCTTTTTC
CTTTTTTTCNTTCTTTCCTNTNCCCCTTTTCTCTTCCTTTTTCTCTCCCT
CTTCTTCCCTTTTTCCTCTTTTCCGTCTTTTCCTCCCCCTTTCACCTTTT
CCCTCTTCCTTTTTCCCNCACTCNCCNNNCTCTTACTCTACCTCCAATCA
TTCATTTCTACTTTTCTTTATATTTTCCCTTCATTCTCTTTTCCTTGTTT
TACAANNTTGGCGACCTCGATGTCTCCCTCCCCCTTCCATNNCCTACAAC
CCACCACTGCCCTTCTTTCTTTTTTTTTTTTCNNTCCCTCCCCCCTCTCG
TTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGCCCGGCNCNCT
AAGNNNNNNNNNNCGNGTTTGTGTGTGTTCTTTGCNNTNNNNNCATTTCT
CACCCNTCCCTTTTTTGGCTCCCCATCTCCCCGACGATGTCACTTTTCGC
ACAGAGGAANAATGCTATTACATTGCGCATCCTCTTTCATCTATCTTCTC
GGNNNCCTTTTTTTTACTTTCGGCGCTTCGTGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_b06.b1 MSMg01no351_b06.b1 CHROMAT_FILE:
MSMg01no351_b06.b1 PHD_FILE: MSMg01no351_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:14 2005
         (515 letters)



>mm_chr19_46273924_46274838
          Length = 915

 Score =  969 bits (501), Expect = 0.0
 Identities = 507/509 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctttttcacttgctttgattttgagacagggtttctctgtgtagctctctggctg 66
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gaattctttttcacttgttttgattttgagacagggtttctctgtgtagctctctggctg 820

                                                                       
Query: 67  tccttgaacttgatctgtagaccaggctagcctcaaatcaaagatccacctgtctctgac 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tccttgaacttgatctgtagaccaggctagcctcaaatcaaagatccacctgtctctgac 760

                                                                       
Query: 127 tcctgagtgctgggattaaaggcatgcaccaccactatcaggcttaaaaaaattaggagg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tcctgagtgctgggattaaaggcatgcaccaccactatcaggcttaaaaaaattaggagg 700

                                                                       
Query: 187 ttctttagggaaacagagtatggttctaaaagttatcaagttccgaagtaacttcaagtt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ttctttagggaaacagagtatggttctaaaagttatcaagttccgaagtaacttcaagtt 640

                                                                       
Query: 247 ctccacacaaatgaattttataaggtcatttctttctctttgacatccattggatctaaa 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 639 ctccacacaaatgaattttataaggtcatttctttctctttgacatccattgggtctaaa 580

                                                                       
Query: 307 caggaaaatatataagtatttaggaggaagataggaaggttaaaaaaaaaaaggactcta 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 caggaaaatatataagtatttaggaggaagataggaaggttaaaaaaaaaaaggactcta 520

                                                                       
Query: 367 gagactagaattgtagaaagactattcaaatccatcctcaagactcaatctactttcttc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gagactagaattgtagaaagactattcaaatccatcctcaagactcaatctactttcttc 460

                                                                       
Query: 427 tggtgctttctatatatcttgcttcaaatgatatttactcttgtgaacctacgtcagtac 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tggtgctttctatatatcttgcttcaaatgatatttactcttgtgaacctacgtcagtac 400

                                        
Query: 487 agaactagctctttgatagccaggtctag 515
           |||||||||||||||||||||||||||||
Sbjct: 399 agaactagctctttgatagccaggtctag 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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