Query= MSMg01no351_h07.b1 MSMg01no351_h07.b1 CHROMAT_FILE:
MSMg01no351_h07.b1 PHD_FILE: MSMg01no351_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:42 2005
(559 letters)
>mm_chr19_59637623_59638581
Length = 959
Score = 942 bits (487), Expect = 0.0
Identities = 490/491 (99%)
Strand = Plus / Minus
Query: 5 gaattcttttctaattctccagaaatcttaacgtagcactcttaaacatgtatggtccca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gaattcttttctaattctccagaaatcttaacgtagcactcttaaacatgtatggtccca 432
Query: 65 aaaatagagcttgaaaactaacaaaaaaggtatatcgacttagaattttacatgctacat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aaaatagagcttgaaaactaacaaaaaaggtatatcgacttagaattttacatgctacat 372
Query: 125 cagtacttctatctgtaattaataaacagtagctataaaagcataagtatatgtaaaccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cagtacttctatctgtaattaataaacagtagctataaaagcataagtatatgtaaaccc 312
Query: 185 tatctgtcaaataaacccaactgaaaaacttgaagcatagtagcccaacagagcagaaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tatctgtcaaataaacccaactgaaaaacttgaagcatagtagcccaacagagcagaaca 252
Query: 245 ctgttgttttacaagtgtggggaaagcgtggggtggggggcacataagtatcacagtaag 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctgttgttttacatgtgtggggaaagcgtggggtggggggcacataagtatcacagtaag 192
Query: 305 tatatggagttcccagaacaattcacagaattttgtccttttattttaccatgtgggtcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tatatggagttcccagaacaattcacagaattttgtccttttattttaccatgtgggtcc 132
Query: 365 tagagtttgaacttggatcatcaagcttggtggcaaagacctttgagccatctcctatac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tagagtttgaacttggatcatcaagcttggtggcaaagacctttgagccatctcctatac 72
Query: 425 caaagaacatattttaagagcatagtcaaacttaaatgtacattcccaaagatagactat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 caaagaacatattttaagagcatagtcaaacttaaatgtacattcccaaagatagactat 12
Query: 485 tcaaagccatt 495
|||||||||||
Sbjct: 11 tcaaagccatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_h07.g1 MSMg01no351_h07.g1 CHROMAT_FILE:
MSMg01no351_h07.g1 PHD_FILE: MSMg01no351_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:42 2005
(436 letters)
>mm_chr19_59457704_59458539
Length = 836
Score = 762 bits (394), Expect = 0.0
Identities = 419/436 (96%), Gaps = 16/436 (3%)
Strand = Plus / Plus
Query: 1 ttgccaaagcctgagtgtgggagctgaagagatggctcagtatttaagagtgcttgtggc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ttgccaaagcctgagtgtgggagctgaagagatggctcagtatttaagagtgtttgtggc 260
Query: 61 acagtaatgaggattggagttcagatcccagcatccaggcaaccaccttgggtgtcccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagtaatgaggattggagttcagatcccagcatccaggcaaccaccttgggtgtcccac 320
Query: 121 aaatatgtgtgggcagaaatgcatctctagctccaagggaatctgcctgtcttttggcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatatgtgtgggcagaaatgcatctctagctccaagggaatctgcctgtcttttggcct 380
Query: 181 ctgtgtactcctctacatacatgcatgtattcatatagtcacactcagaaagactgacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgtactcctctacatacatgcatgtattcatatagtcacactcagaaagactgacac 440
Query: 241 acacacacacacacacacacacacacacacacgcacgcacacacacacgcacacacacac 300
|||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 441 acacacacacacacacacacacac------------gcacacacac--gcacacacacac 486
Query: 301 acacacacaaatagataaaaatctcttaaaaattcttagtgtgggtgggttacagtacag 360
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 acacaca--aatagataaaaatctcttaaaaattcttagtgtgggtgggttacagtacag 544
Query: 361 tcggagtgaagtttgctaagcagatggcatggagcccagttctagtcaatagtatgttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tcggagtgaagtttgctaagcagatggcatggagcccagttctagtcaatagtatgttgg 604
Query: 421 ccttgccttacagaga 436
||||||||||||||||
Sbjct: 605 ccttgccttacagaga 620
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
