Query= MSMg01no355_j02.b1 MSMg01no355_j02.b1 CHROMAT_FILE:
MSMg01no355_j02.b1 PHD_FILE: MSMg01no355_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:03 2005
(313 letters)
>mm_chr19_18224121_18224833
Length = 713
Score = 487 bits (252), Expect = e-142
Identities = 287/308 (93%), Gaps = 18/308 (5%)
Strand = Plus / Minus
Query: 5 gaattcttcttgattcttctatttactctgtgaatgatagaattgtccatacaccttgga 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gaattcttcttgatgcttctatttactctgtgaatgatagaattgtccatacaccttgga 347
Query: 65 gcatggtaagcagtcaccaatggtgctgatggaaatggtgaaatgaggagtcatgtgctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gcatggtaagcagtcaccaatggtgctgatggaaatggtgaaatgaggagtcatgtgctg 287
Query: 125 gaaatcagtagaactgatgggcagaagtaaggttactctcttggagtagtactggatttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gaaatcagtagaactgatgggcagaagtaaggttactctcttggagtagtactggatttc 227
Query: 185 tttaggtaaaatttcttgctactgttttttgttgttgttgttttgttttgttttgttttg 244
||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 226 tttaggtaaaatttcttgctactgttttt--ttgttgttg------------ttgttttg 181
Query: 245 ttttgttttttttgctttttgttttttgtttttttgttttttgttttttgttttttgttt 304
||||| || ||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 180 ttttggttcttttgctttttgttttttgtttttttgtttt---ttttttg-tttttgttt 125
Query: 305 ttgttttt 312
||||||||
Sbjct: 124 ttgttttt 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_j02.g1 MSMg01no355_j02.g1 CHROMAT_FILE:
MSMg01no355_j02.g1 PHD_FILE: MSMg01no355_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:03 2005
(388 letters)
>mm_chr19_18068682_18069469
Length = 788
Score = 683 bits (353), Expect = 0.0
Identities = 377/385 (97%)
Strand = Plus / Plus
Query: 1 cagaaaacaaatacttagctgtctttctagaatgtgagtagaaggaatgttaagctttgg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 cagaaaacaaatacttagctgtctttctagaacgtgagtagaaggaatgttaagctttgg 260
Query: 61 cttgagtatcctgtagtagaattagcaaatgggatgatattgtaataaacttttcttcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagtatcctgtagtagaattagcaaatgggatgatattgtaataaacttttcttcta 320
Query: 121 tgtgagccatcataagaagaatttgtcattaaagtggctctcataggcaggaaggagcaa 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgagccatcataagaagaacttgtcattaaagtggctctcataggcaggaaggagcaa 380
Query: 181 agacctcattagtggggccattcttggaaactgaattcaaaagtagcaagaacagtcctg 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 agacctcattagtggggccattcttggaaacttaattcaaaagtagcaagaacagtcctg 440
Query: 241 tggaaggtggacatctgtggcaacatgaatgagaaatgtcccctgaaggctcagactttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaaggtggacatctgtggcaacatgaatgagaaatgtcccctgaaggctcagactttt 500
Query: 301 gaacacttgctttttgatgctggttggggatgtttgggagatgtgattttgctggggacc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 gaacacttgctttttgatgctggttggggatgtttgggagatgtgattttgctggggaac 560
Query: 361 atgcattactgggctagcatttaag 385
| | |||||||||||| |||||||
Sbjct: 561 gtacgttactgggctagtatttaag 585
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space: 295241
Effective search space used: 295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
