Query= MSMg01no358_k16.b1 MSMg01no358_k16.b1 CHROMAT_FILE:
MSMg01no358_k16.b1 PHD_FILE: MSMg01no358_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:59 2005
(511 letters)
>mm_chr19_44739914_44740824
Length = 911
Score = 924 bits (478), Expect = 0.0
Identities = 499/506 (98%)
Strand = Plus / Plus
Query: 6 gaattccaggacagtcagagctatacagagaaaccctgtctcaaaaaagaaagtgtgaat 65
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 206 gaattccaggacagccagagctatacagagaaaccctgtctcaaaaaaaaaagtatgaat 265
Query: 66 tagaacactagaattagcatgacatctcaattgacatcatctgtgcttaaatccatgcca 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tagaacactagaattagcatgacatctcaattgacatcatctgtgcttaaatccatgcca 325
Query: 126 ccatgttggaatgacccaaccatgtgttcttataaaccacgtgtttcagcggacaggatg 185
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 326 ccatgttggaatgacccaaccatgtgttcttgtaaaccacgtgtttcagcggacaggatg 385
Query: 186 tgaattgtcgttctgcttgaacgggcactctgcctacaccctgcattgtgctttgtttct 245
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 386 tgaattgtcgttctgcttgaactgtcactctgcctacaccctgcattgtgctttgtttct 445
Query: 246 gcaacataaggctgtgtacatcaccagggttggggtctcgaagctatcaggtatggaatc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gcaacataaggctgtgtacatcaccagggttggggtctcgaagctatcaggtatggaatc 505
Query: 306 aactttgacacaattacatgcaatgcatgacctttttgaattgtccccaaaatatgatgg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aactttgacacaattacatgcaatgcatgacctttttgaattgtccccaaaatatgatgg 565
Query: 366 tattattcagtttgaacgatcaccatgtgtctctgtgtgtgactctaattttgaattgtt 425
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 566 tattattcagtttgaacgatcaccatgtgtttctgtgtgtgactctaattttgaattgtt 625
Query: 426 atagattattgttgtgtgacaatatatttgcatcttaacaacatggcgtgtctgagttgg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 atagattattgttgtgtgacaatatatttgcatcttaacaacatggcgtgtctgagttgg 685
Query: 486 cacagcatataccccatcgcgtttga 511
||||||||||||||||||||||||||
Sbjct: 686 cacagcatataccccatcgcgtttga 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_k16.g1 MSMg01no358_k16.g1 CHROMAT_FILE:
MSMg01no358_k16.g1 PHD_FILE: MSMg01no358_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:59 2005
(447 letters)
>mm_chr19_44917894_44918740
Length = 847
Score = 584 bits (302), Expect = e-171
Identities = 323/336 (96%), Gaps = 12/336 (3%)
Strand = Plus / Minus
Query: 1 tctctgagcagggcaagaaccagctgaggtttgagagagcagagtcctggcatgagtgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctctgagcagggcaagaaccagctgaggtttgagagagcagagtcctggcatgagtgga 265
Query: 61 gttgggagggtctctggctgcccctgggaggcgaacatggaagcaggaagaccagctagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttgggagggtctctggctgcccctgggaggcgaacatggaagcaggaagaccagctagg 205
Query: 121 gcttcttctttccttcctcttttcctccctccctcccttcctcttttatttctttgcaag 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 gcttcttctttccttcctctttccctccctccctcccttcctcttttatttctttgcaag 145
Query: 181 ttctggtggcttggacagtatggtacatacagtgcaaaaagtaggaaatggactcctccc 240
||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 144 ttctggtggcttggacagtatgg----tacagtgcaaaaagtaggaaatgga-------c 96
Query: 241 cccacccccctccagacagggtctcactgtgtagtcctggctgtcttggaacttgctctg 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ccc-cccccctccagacagggtctcactgtgtagtcctggctgtcttggaacttgctctg 37
Query: 301 tagatctgactgcctatacctcccaagtccaccacc 336
||||||||||||||||||||||||||||||||||||
Sbjct: 36 tagatctgactgcctatacctcccaagtccaccacc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
