BAC Information

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BAC

Clone NameMSMg01-358O17
Chromosome19 (Build37)
Map Location 45,348,952 - 45,529,425
singlet/doubletdoublet
Overlap geneBtrc, EG627889
Upstream geneScd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1
Downstream genePoll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358O17.T7 (MSMg01no358_o17.b1)MSMg01-358O17.TJ (MSMg01no358_o17.g1)
ACCAG468460AG468461
length740748
length of high quality
(start - end)		491 (62 - 552)462 (65 - 526)
definitionCHROMAT_FILE: MSMg01no358_o17.b1 PHD_FILE: MSMg01no358_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:18 2005CHROMAT_FILE: MSMg01no358_o17.g1 PHD_FILE: MSMg01no358_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,348,952 - 45,349,442)(45,528,964 - 45,529,425)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCAAGGC
CAGTCTCGCGTCTATAGAATGAGTTCCAGGATACACAGGGTTACACAGAG
AAACCCTGTCTTAAGAAAACAACAACAAAACCAAAACAATAACACCAACA
AAATAAGATAAAGACTACTAGACATCAAACATTGGTTCAGGGACTAGAGA
GTGGTTAAGAGCGTCGTCTGCTCTTCTAGAGGACCCGGGTCCGAGTGTCA
GCACCCACCTGGTGGCTCACAACCATCAGTAAGTAAGTCCAGTCCTAGGG
CATCTGACTCCCTCTTCTGGACTCTGAGGGCACCAGGCATGAAGGTGATA
CCCAGACATACATGCAGGCAAAACACATACACAAAATTTAAAAGTAATAA
ATCATAAAAATCAAAACAAACAAACAACAACACTGACTCCAAGTCACCTA
TCATTTTCTGGTCCCGCTTTCCACTCTCTATCATCTACCACACACACTCT
TCCCAGAAAAAGTAGCAAGAGCCAAAGGGAATCTGGGAGATGGTGGGGAT
AGCTAAAGCCGAGAGATGCTACAGCAGCCTCAGAAATTCTGCAAGTCCAC
CTTTCCAGAAAAAACAAGGCCAGGTGTGGTGGCCCCGCCTTTTAATCCAA
GGACTTGGGAGGGCGACTTCCTTTTTTTTATTATTTCTCTCGCCTTACGG
ATCCAATTACTTGTCATTTTTTTCTTTTCTTGTCTTTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTAACAAGAAAAAGGAGTAAAAATCTGTAGACACTG
TTAGAGCTATTTAGTGTTTTGTTTTAATAGGATAGCCAAAAATTTATTCT
GGCCAAGTCATTGTTAAAAGAAAGCCAACCAAGAATGAAAAATTCAGCAC
AACTGTTAAATGGGACAGTAGCAACGCCAAGTGATTGGAATATAAGGGGC
AAGGAACTGGTTACCACCCAATATTGAAGGAGACATGTGGAGTGTCAGTG
AGTTAGAGATGAATAATCACTCCCAACTTGACAGTAACAAAGAATGATGA
AATTGCCACATGAGCCTAATAGATCATCTGGGTGGTCCTTAGGAACCTCC
CCACCAACACTCAAAAGAGTTCAGTGTCCAAGGACTTACTGTCCACGCTC
TTAGTGAGACCGAATCCCAACAAGAAAGGTACCCAACTGCTCTACCCAAC
AAATTAAGTTACAGTCAAGAAACTCAAGAGGAACTAGTTGACACAGGCAA
GCATCACCCAGAGGCTACTAAACTAGCAGACTACTAAAATAGCAGGTGGC
ACTTTTTATAAATAGTAAAATTGTTACATAATCCTGACTGTATCCGCCTT
AGAAACTAAGAAAAAATAGTACTCTTCCGTGAAAAATCCGGCCAACAATG
CCTGGTCTCCTTGGCTAAAAAAAGGACTTTTCAAAAAATTTCTGAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_o17.b1 MSMg01no358_o17.b1 CHROMAT_FILE:
MSMg01no358_o17.b1 PHD_FILE: MSMg01no358_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:18 2005
         (491 letters)



>mm_chr19_45348752_45349642
          Length = 891

 Score =  942 bits (487), Expect = 0.0
 Identities = 490/491 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatagaatgagttccaggatacacagggttacacagagaaaccctgtcttaagaaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatagaatgagttccaggatacacagggttacacagagaaaccctgtcttaagaaaaca 260

                                                                       
Query: 61  acaacaaaaccaaaacaataacaccaacaaaataagataaagactactagacatcaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaacaaaaccaaaacaataacaccaacaaaataagataaagactactagacatcaaaca 320

                                                                       
Query: 121 ttggttcagggactagagagtggttaagagcgtcgtctgctcttctagaggacccgggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggttcagggactagagagtggttaagagcgtcgtctgctcttctagaggacccgggtc 380

                                                                       
Query: 181 cgagtgtcagcacccacctggtggctcacaaccatcagtaagtaagtccagtcctagggc 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgagtgtcagcatccacctggtggctcacaaccatcagtaagtaagtccagtcctagggc 440

                                                                       
Query: 241 atctgactccctcttctggactctgagggcaccaggcatgaaggtgatacccagacatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctgactccctcttctggactctgagggcaccaggcatgaaggtgatacccagacatac 500

                                                                       
Query: 301 atgcaggcaaaacacatacacaaaatttaaaagtaataaatcataaaaatcaaaacaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgcaggcaaaacacatacacaaaatttaaaagtaataaatcataaaaatcaaaacaaac 560

                                                                       
Query: 361 aaacaacaacactgactccaagtcacctatcattttctggtcccgctttccactctctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacaacaacactgactccaagtcacctatcattttctggtcccgctttccactctctat 620

                                                                       
Query: 421 catctaccacacacactcttcccagaaaaagtagcaagagccaaagggaatctgggagat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catctaccacacacactcttcccagaaaaagtagcaagagccaaagggaatctgggagat 680

                      
Query: 481 ggtggggatag 491
           |||||||||||
Sbjct: 681 ggtggggatag 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no358_o17.g1 MSMg01no358_o17.g1 CHROMAT_FILE:
MSMg01no358_o17.g1 PHD_FILE: MSMg01no358_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:18 2005
         (462 letters)



>mm_chr19_45528764_45529625
          Length = 862

 Score =  886 bits (458), Expect = 0.0
 Identities = 461/462 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaacaagaaaaaggagtaaaaatctgtagacactgttagagctatttagtgttttgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ttaacaagaaaaaggagtaaaaatctgtagacactgttagagctatttagtgttttgttt 603

                                                                       
Query: 61  taataggatagccaaaaatttattctggccaagtcattgttaaaagaaagccaaccaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 taataggatagccaaaaatttattctggccaagtcattgttaaaagaaagccaaccaaga 543

                                                                       
Query: 121 atgaaaaattcagcacaactgttaaatgggacagtagcaacgccaagtgattggaatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 atgaaaaattcagcacaactgttaaatgggacagtagcaacgccaagtgattggaatata 483

                                                                       
Query: 181 aggggcaaggaactggttaccacccaatattgaaggagacatgtggagtgtcagtgagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aggggcaaggaactggttaccacccaatattgaaggagacatgtggagtgtcagtgagtt 423

                                                                       
Query: 241 agagatgaataatcactcccaacttgacagtaacaaagaatgatgaaattgccacatgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agagatgaataatcactcccaacttgacagtaacaaagaatgatgaaattgccacatgag 363

                                                                       
Query: 301 cctaatagatcatctgggtggtccttaggaacctccccaccaacactcaaaagagttcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 362 cctaatagatcatctgggtggtccttaggaacctccccaccaacactcagaagagttcag 303

                                                                       
Query: 361 tgtccaaggacttactgtccacgctcttagtgagaccgaatcccaacaagaaaggtaccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgtccaaggacttactgtccacgctcttagtgagaccgaatcccaacaagaaaggtaccc 243

                                                     
Query: 421 aactgctctacccaacaaattaagttacagtcaagaaactca 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aactgctctacccaacaaattaagttacagtcaagaaactca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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