BAC Information

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BAC

Clone NameMSMg01-360E11
Chromosome19 (Build37)
Map Location 43,523,274 - 43,523,686
singlet/doubletsinglet
Overlap geneCnnm1
Upstream geneD19Ertd386e, Loxl4, 4833409A17Rik, Hps1, LOC545291, EG627624
Downstream geneGot1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360E11.T7 (MSMg01no360_e11.b1)MSMg01-360E11.TJ (MSMg01no360_e11.g1)
ACCAG469492AG469493
length763772
length of high quality
(start - end)
271 (44 - 314)459 (71 - 529)
definitionCHROMAT_FILE: MSMg01no360_e11.b1 PHD_FILE: MSMg01no360_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:59 2005CHROMAT_FILE: MSMg01no360_e11.g1 PHD_FILE: MSMg01no360_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAACATTTCCCTTAAAGAAATACAGGAGAACACTGCTAAAGAGTTACA
AGTCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTCCTTA
AAGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAA
CAGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATACTAGA
CCTAAAAAGGGAAGTAGACTCAATAAAGAAAACCCAAAGTGAGGCGACGC
TGGAGATAGAAACCCTATTTTAGAAATCTGGAACCATAGATGCCAGCATC
AGCAACAGAATACCAGAGATGGACGAGAGAATCTCAGGTGCATAAGACTC
CATAGAGAATATCGGCACAACAATCAAAGAAAATGGAAAATGCTAAAAGA
TCCTAACTTCCAACATCCAGGAAACCCAGGACTCCATGAGAAGACCAACC
CTACGGACAATATGAGTGCACGATTATGAATATCTTCTTCTCCCAGGTTC
ACCCTACACCCTTCCCTTAATTTTTTGATCAAAACTTTTCTCATCTACCT
AAAGATATGCCCTTGAAACCTACCTTATTCTTTACCCCACCTTTCCGCAA
CCTTGTCATTNTCAAACTCATATCCCCCCCCGACATTTATCAATACTCCT
AACTTCCCAAGTGGTTTAAATCTATACAAGACCATCTTATTTTCTGTTCC
GCCCCATCATTGG
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTCATGAGAGGCAGGGGAGATGGCTCAGC
ACTTAAGAGTATGTACTTTTGCAGAAGACCTGGGTACCATTCCTAGCATT
CATATTGGTTGCTCATATCTGCCTGTTCTAGGTTATCTCACACCCTCTTC
TAACCTCTGTGGGTTTCTGCACACACACACACACACACACACACACTCAC
ACACACACACACACACACACTGTGCACATACAGACAAGCAGGCAGACACA
CATACACATAATTTATATTTTTTAAAAAGGCTATTTCATGATAATGGGAT
TCTTTTCAGATGTTATTCACACTTTTTTCTGTTGTTTTATCTCTAATTTT
TTTCTATATAAAGTATAGAAATCTATAAACTTCAGTAAAATTCATATGAA
AGCAAAATATGTCATTTAACCAGCTGCCCTGACCTCTGTGTTTCTATTGC
ATCTTATTTTATCTTAGTGATTTTTGTATAGGCTTTTGTCTTACACATAT
ATTTATATATTGAGCTATGAATCATGAACTGCAATGTCATTTGGAAATTT
CGTGTAAAGATGAATTTGCTCTGCCTTTTTACTTCGTTATGAGAAATATT
TTTTCTTTGCCCCTATTTTTCTTGCCTTTTGGCCTTCAAATTTTTGTACT
TTCTCCATTCCTTTTCTTGTGGCNATGCCTTACTTTGTTCTATTACTTTT
ATTCGCTCCTTTTGCTTCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_e11.g1 MSMg01no360_e11.g1 CHROMAT_FILE:
MSMg01no360_e11.g1 PHD_FILE: MSMg01no360_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:59 2005
         (459 letters)



>mm_chr19_43522828_43523686
          Length = 859

 Score =  716 bits (370), Expect = 0.0
 Identities = 406/426 (95%), Gaps = 16/426 (3%)
 Strand = Plus / Minus

                                                                       
Query: 37  gagtatgtacttttgcagaagacctgggtaccattcctagcattcatattggttgctcat 96
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 859 gagtatgtacttttgcagaagacctgggtaccattcctagcatccatattggttgctcat 800

                                                                       
Query: 97  atctgcctgttctaggttatctcacaccctcttctaacctctgtgggtttctgcacacac 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 atctgcctgttctaggttatctcacaccctcttctaacctctgtgggtttctgcacacac 740

                                                                       
Query: 157 acacacacacacacacacactcacacacacacacacacacacactgtgcacatacagaca 216
           |||||||||||          |||||||||||||||||||||||||||||||||||||||
Sbjct: 739 acacacacaca----------cacacacacacacacacacacactgtgcacatacagaca 690

                                                                       
Query: 217 agcaggcagacacacatacacat---aatttatattttttaaaaaggctatttcatgata 273
           |||||||||||||||||||||||   ||  || |||||||||||||||||||||||||||
Sbjct: 689 agcaggcagacacacatacacataaaaa--ta-attttttaaaaaggctatttcatgata 633

                                                                       
Query: 274 atgggattcttttcagatgttattcacacttttttctgttgttttatctctaattttttt 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 atgggattcttttcagatgttattcacacttttttctgttgttttatctctaattttttt 573

                                                                       
Query: 334 ctatataaagtatagaaatctataaacttcagtaaaattcatatgaaagcaaaatatgtc 393
           ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 572 ctatataaagtatagaaatctataagcttcagtacaattcatatgaaagcaaaatatgtc 513

                                                                       
Query: 394 atttaaccagctgccctgacctctgtgtttctattgcatcttattttatcttagtgattt 453
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 atttaaccagttgccctgacctctgtgtttctattgcatcttattttatcttagtgattt 453

                 
Query: 454 ttgtat 459
           ||||||
Sbjct: 452 ttgtat 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)