BAC Information

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BAC

Clone NameMSMg01-361C21
Chromosome19 (Build37)
Map Location 28,783,469 - 28,783,936
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042612, Rfx3, LOC666997, LOC433235, Glis3
Downstream geneEG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361C21.T7 (MSMg01no361_c21.b1)MSMg01-361C21.TJ (MSMg01no361_c21.g1)
ACCAG470176AG470177
length789775
length of high quality
(start - end)		494 (49 - 542)468 (80 - 547)
definitionCHROMAT_FILE: MSMg01no361_c21.b1 PHD_FILE: MSMg01no361_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:08 2005CHROMAT_FILE: MSMg01no361_c21.g1 PHD_FILE: MSMg01no361_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCTCGGTCCAGGCACTGACCTAAATTCCTCTGTCCTGGCTCA
TGGTATAGCTGCCTCTGTTCTGTGACACTCCTTATATAATTAATATTGCA
TCCTTAAGTTTTTGCATAGTTGTGAGGGACCCTAAGGGGTTTTCCATTCC
CACTCCCTTCTTACAGCTTCCCCCTCCTTGGTCAAGGCTAGGCCAAGTTC
CATTCTCTACCCACAGGAACATTCTTGAGTAAAAAAAAAAGTCTCAGAAT
GTACGTACTGATAGTCACCTGACCCTCTGGAAAGTCCCAGGTAGAGTTTA
AATGCACGCCATGCTTGATAGCCAATAGATTTAAAGGTCAATATATTTAA
CCAATAAGTTGGAACTGTAACTTTGCTGGTGTAACCTGTGCCCCTAAAAA
GTATAAAAATTGCGTGTAATAGCCATTCAGGGTGGCCTTCTCCCTCACTC
GCTTCAAGGGACTGATTGAGAGTTGACCCCGACATGCCGGAAAATAACCT
CGTGCTTTTGCATCAATCTGCATCTTTGTGTCTCATTCAGGGGCATTTTG
AAGTAATACCACAGACCGAGGGTTGGAGGCTCCCAGTTGAAAAATAAAAT
TTTTTGAACTNTGGCGTTAGAAGTCTTTTCCACAGCTTTAAGGCTGTCCC
GGAAGGCCCACGGGTTACATTCCTGCTTAAAAATTAAACCCACCTTGAAT
CCTGGACCCAGGTGGGAAAAAATGTAAATATGTTCGGTT

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCTATAGACCCATAAATA
TGCACCCTCCGTGGTCATAATGACTCAGGTGGTGGGAACTGTTAGCTTCA
AAGTCATAGTTATAACCTAGGAAAACTTAGCAGCCACACAGAGGCAAACA
AAGGAAGAACTCTTTACTGGATGCCAGAATTATTGGTTAAATATATGTTT
GTGAGCAGGTGAGCATCTCAGACTATTTTCCAACAGATTAATGGCTGATT
GTAAAGGCGAAACTTCCTGTAGGATGGGGAATCTGGCAGACAAACCTGCT
GATTAAAGTGGTATTTGTGCCACCTGGGGTGAGGTGGCAGTGCCACACTC
CATATCATTCCCACATCCTCATTCTGATCATGAAGAAACAGTCAAGCAAA
TTCCAGTTGAAGGCATCCTGTCAGATCCCTGGCTATTTGTCTTCAGAAGT
GGTGTCCTGAAAGACAGGAGTAACTACTCCAAATTAAAGGAAACTAAATA
TACATCATTGCCCAGGGTACTGGGTGACCCTGACTGATCCCGGATCAGGA
AAAAAACCACGATGTAAATTAACTGTGGGGTTACAAACAGTATTGGATTG
ACCTTGGGTTGGAATGTTTCTTTTTGGAAACCTTAAAAAAGTCTTTGGTC
CCTTGGAACATTTGCTGCATTATTCGGGTTCCCACCCTTTGCTTTTTATT
TCGGTGTGTTTTACTCTTTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_c21.g1 MSMg01no361_c21.g1 CHROMAT_FILE:
MSMg01no361_c21.g1 PHD_FILE: MSMg01no361_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:08 2005
         (468 letters)



>mm_chr19_28783269_28784136
          Length = 868

 Score =  897 bits (464), Expect = 0.0
 Identities = 467/468 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttctatagacccataaatatgcaccctccgtggtcataatgactcaggtggtgggaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 atttctatagacccataaatatgcaccctccgtggtcataatgactcaggtagtgggaac 260

                                                                       
Query: 61  tgttagcttcaaagtcatagttataacctaggaaaacttagcagccacacagaggcaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttagcttcaaagtcatagttataacctaggaaaacttagcagccacacagaggcaaac 320

                                                                       
Query: 121 aaaggaagaactctttactggatgccagaattattggttaaatatatgtttgtgagcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaggaagaactctttactggatgccagaattattggttaaatatatgtttgtgagcagg 380

                                                                       
Query: 181 tgagcatctcagactattttccaacagattaatggctgattgtaaaggcgaaacttcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagcatctcagactattttccaacagattaatggctgattgtaaaggcgaaacttcctg 440

                                                                       
Query: 241 taggatggggaatctggcagacaaacctgctgattaaagtggtatttgtgccacctgggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggatggggaatctggcagacaaacctgctgattaaagtggtatttgtgccacctgggg 500

                                                                       
Query: 301 tgaggtggcagtgccacactccatatcattcccacatcctcattctgatcatgaagaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaggtggcagtgccacactccatatcattcccacatcctcattctgatcatgaagaaac 560

                                                                       
Query: 361 agtcaagcaaattccagttgaaggcatcctgtcagatccctggctatttgtcttcagaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtcaagcaaattccagttgaaggcatcctgtcagatccctggctatttgtcttcagaag 620

                                                           
Query: 421 tggtgtcctgaaagacaggagtaactactccaaattaaaggaaactaa 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggtgtcctgaaagacaggagtaactactccaaattaaaggaaactaa 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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