BAC Information

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BAC

Clone NameMSMg01-361I04
Chromosome19 (Build37)
Map Location 13,863,757 - 13,864,275
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp91, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496
Downstream geneOlfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505, EG667433, Tle4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361I04.T7 (MSMg01no361_i04.b1)MSMg01-361I04.TJ (MSMg01no361_i04.g1)
ACCAG470421AG470422
length762762
length of high quality
(start - end)		515 (73 - 587)520 (78 - 597)
definitionCHROMAT_FILE: MSMg01no361_i04.b1 PHD_FILE: MSMg01no361_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:35 2005CHROMAT_FILE: MSMg01no361_i04.g1 PHD_FILE: MSMg01no361_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAACTGTCAAAACCAAATGGATGAGAAGCACCTGAAAAAA
TGTTCAACATCCTTAATCATCAGGAAAATGCAAATCAAAACAACCCTGAG
ATTCCAACTCACACTAGTCAGAATGTCTAGGATCCAAAATTCACATGACA
GAAGATGCTGGTGATGATATGGAGAAAGAGTAACACTCTTCCATTGATGG
TGGGATTGCAAGCAGGTACAACCACTCTGGAAATCAGACTGGCTATTCCT
CAGAAAATTGGACATAGTACTACCTGAAGATTCAGCAAAATCTCTCCTGG
GCATATACCCAGAAGATGTTCCAACTTGTAATAAGGACACATGCTCCAAC
ATGTTCATAGCAGCCTAATTTATAATAGCCAGAAGTTGGAAAGAACCAAG
ATGTCCCTCAACAGAAGAATGGATTCAAAATATGTGGTACATTTACACAA
TGGAGTACTACTCAGCTATTAAAAACAATGAATTTATGAAATTCTTACTC
AAATGGACATATCTGGAGGCTATCATTCTGAGTGAAGCAACCCAACGATA
AAAGAACATACATGATAGGCACTCACTGATAAGTGGATATTAGTCCCAAA
ATTTAGAATAACCTAGATACTATTTGCTAAACACATGACATTTTTGAAGA
ATAAATATTACAGTGTGGACACTTTGTTCCTTCCTATAATGGGGAAACCT
AATACCCGATGN

TTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTTATATGTCCCATTCATCTT
TCCCAATTTTGAGGTCCCAGATGTATAGATCTCGTTTTAATTCTAGGTAT
TTTTTTCTCTAATATTTTAAATAACCACTTAAAGCATTTAGGGTTTTCCT
GAAAATACTAATTATTGTTATTTCTCACTAGTTAGCAAAATTTTAAAATG
TTGAATTATACATATTTTTAGAATTATTTTTGTACTATCATAATTGCATT
CTGATTTTTGCTTTACTAAAGTTTATTTCATATGCCAAAATAGCCACAAA
TTTAACTCAGGAAACTATTGTACTTATGTGTGTGCATAATTTATATGTGT
ACGTAATTTCTCTCCTCAAAGTATCTTTGTACTCTTTATAGTTTCTCTTA
TATCCCCTTTCTTACCACATCCTCACCCCATCCAAAAGAACCACTCTTCA
GCTTTTTGTCATATTTTATTAGTAAATTTTGTAGAATTTCATATAAATTT
ACACAATAAGTTATGAAATGATGCATTGTTCATTTCACTAGTATTTTTTA
GAGTAATTAACTCTTTGGCATACATGACTAGGCCACGTTTTATGGTTGGA
CATTGCTATATGCCATGGAAACCACATTCCGTGTTTGTTAATGTATGCGT
TCGCGGATAATGTTATATTCTCTCCTTTTCCCTGGTTTTACTTGGGCATC
TCCCCTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_i04.g1 MSMg01no361_i04.g1 CHROMAT_FILE:
MSMg01no361_i04.g1 PHD_FILE: MSMg01no361_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:35 2005
         (520 letters)



>mm_chr19_13863557_13864475
          Length = 919

 Score =  934 bits (483), Expect = 0.0
 Identities = 511/521 (98%), Gaps = 3/521 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgttatatgtcccattcatctttcccaattttgaggtcccagatgtatagatctcgttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 719 ctgttatatgtcccattcatctttcccaattttgaggtcccagatgtataaatctcgttt 660

                                                                       
Query: 61  taattctaggta-tttttttctctaatattttaaataaccacttaaagcatttagggttt 119
           |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 659 taattctaggtattttttttctctaatattttaaataaccacttaaagcattcagggttt 600

                                                                       
Query: 120 tcctgaaaatactaattattgttatttctcactagttagcaaaattttaaaatgttgaat 179
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 599 tcctgaaaatactaattattgttatttctcactagttaacaaaattttaaaatgttgaat 540

                                                                       
Query: 180 tatacatatttttagaattatttttgtactatcataattgcattctgatttttgctttac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tatacatatttttagaattatttttgtactatcataattgcattctgatttttgctttac 480

                                                                       
Query: 240 taaagtttatttcatatgccaaaatagccacaaatttaactcaggaaactattgtactta 299
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gaaagtttattccatatgccaaaatagccacaaatttaactcaggaaactattgtactta 420

                                                                       
Query: 300 tgtgtgtgcataatttatatgtgtacgtaatttctctcctcaaagtatctttgtactctt 359
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 419 tgtgtgtgcataatttatatgtgtatgtaatttctctcctcaaagtatctttgtactctt 360

                                                                       
Query: 360 tatagtttctcttatatcccctttcttaccacatcctcaccccatccaaaagaaccactc 419
           ||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 359 tatagtttct--tatatcccctttcttaccacttcctcaccccatccaaaagaaccactc 302

                                                                       
Query: 420 ttcagctttttgtcatattttattagtaaattttgtagaatttcatataaatttacacaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttcagctttttgtcatattttattagtaaattttgtagaatttcatataaatttacacaa 242

                                                    
Query: 480 taagttatgaaatgatgcattgttcatttcactagtatttt 520
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taagttatgaaatgatgcattgttcatttcactagtatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 919
Length adjustment: 10
Effective length of query: 510
Effective length of database: 909
Effective search space:   463590
Effective search space used:   463590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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