BAC Information

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BAC

Clone NameMSMg01-361N09
Chromosome19 (Build37)
Map Location 18,090,401 - 18,268,169
singlet/doubletdoublet
Overlap genenone
Upstream geneA230083H22Rik, Gcnt1, Rfk, Pcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361N09.T7 (MSMg01no361_n09.b1)MSMg01-361N09.TJ (MSMg01no361_n09.g1)
ACCAG470666AG470667
length764772
length of high quality
(start - end)		533 (46 - 578)546 (78 - 623)
definitionCHROMAT_FILE: MSMg01no361_n09.b1 PHD_FILE: MSMg01no361_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:59 2005CHROMAT_FILE: MSMg01no361_n09.g1 PHD_FILE: MSMg01no361_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,267,857 - 18,268,169)(18,090,401 - 18,090,946)
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGGATTAACTATTAAGGAAAAAGATATAAGACAAACTAGTAATA
TTAGAAATGAGAATGGGACTGTAGAATAGGAGTCCCTATTTTTGAATGTT
ATGTGGAGTTAAATTGAAAAACTTAGAAGAAATTGATCAACTTCTAGATA
AATCATCAAAGTCAAACTCAAAAGATGTAAACAATCTAAAGACATATGTA
ATGAAGAATGAGACAGAAATAGGAATAAAGATTCTCCAAAAAGAAAACTC
AGGACTAGATGAGGTGGCCGCTGCAGCCTCTCAGACTTTCATAAATATAT
ACAGGGCTTCTAAAACTGTTGCATAACAGATAATAAATTCACAAATTTTG
TTATTCAGAGTTTTGCAGTTTTAATTTTAGGAGATCTTTTGCTTCCTTGG
TTAGGTTTATTTCTAAGGATTGCATTTAATTGCAATTTTCAGAAGTGTAT
ATGGACTGGATTTTGGTTTCTGTTTTTCTTCCTAGATATAAAGTGGGTAG
GGAGGAGTAGGGAGAGGGAAATGGAGAANTANNNNTATGAATGTTTTTTC
CTAAGTATTTGAATGTTAAATCTACGTTTTATGTTCAATATTTGTTGCTT
ACGATAATGCCACATCTTATTGTTTATCTATCTTCGCCCCTACTTTTCAT
CCTTCCCCTTTTTCGCGTCCCCTCTCCATCATTCTAACCTCTTCTTTCCC
TTCTGATCCTCCTC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATCAATGAACAGCAAGCTCA
GATTTGCAGTCATTTAATAACCCAAGTCATTTTAAGAAATGGTCAACACA
CCTTTTCCTTTCAAACCAACAGCTAGTAATTTCTAGTTAAACCAAGTATG
CAGGGCCTTGCTGTGACATGTTTGGCTTTTGACCTGATATGACAGTGGCA
GTGGAGAATCAATAAAAAATAGACACAAGGAACATAAAGCTGGGGTTGGT
TGCTCTATGCTCTGGGATGGATACGTACCAGCTCCAGCAGCCCAGAAACT
CATTCCTTTATTATAAAGAGATGGAACCAGGAGGGGAGTTAGATAATTTC
AGTAGAATGTCTTTATAACAGAGCAGCCTCAGGCTGCAGTCACCCGGGAG
GGGGAAGCTATTCCATGCATACTGATTTTAGCTAAAGGTCAATTGTTTTT
ACAAATCCATACTTGGACCAGAGGGAAGGCTTGCCATTCTCAGGAATCTG
AGACATTGGTGTCTCTGACATGGCAATGCCTCTGTCAATAATCACATTCC
CGCAGGGCTTTAATCTGCTCTCTTTAGGACTTTATGGTAACCCTGTACTG
TCTTAGTCAAAGTTCTATTCCTGCACAAACATCATGACTAAAAAGTAATT
TGGGAAAGAAAGGGTTTATTCAGCTTAAACTTTACATTGTTGTTCTCCAC
CCAAGGACGGGAATCCCTCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_n09.b1 MSMg01no361_n09.b1 CHROMAT_FILE:
MSMg01no361_n09.b1 PHD_FILE: MSMg01no361_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:59 2005
         (533 letters)



>mm_chr19_18267857_18268789
          Length = 933

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttggattaactattaaggaaaaagatataagacaaactagtaatattagaaatg 64
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaattcttggaaaaactattaaggaaaaagatataagacaaactagtaatattagaaatg 254

                                                                       
Query: 65  agaatgggactgtagaataggagtccctatttttgaatgttatgtggagttaaattgaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 agaatgggactgtagaataggagtccctatttttgaatgttatgtggagttaaattgaaa 194

                                                                       
Query: 125 aacttagaagaaattgatcaacttctagataaatcatcaaagtcaaactcaaaagatgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aacttagaagaaattgatcaacttctagataaatcatcaaagtcaaactcaaaagatgta 134

                                                                       
Query: 185 aacaatctaaagacatatgtaatgaagaatgagacagaaataggaataaagattctccaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 aacaatctaaagacatatgtaatgaagaatgagacagaaataggaataaagattctccaa 74

                                                                       
Query: 245 aaagaaaactcaggactagatgaggtggccgctgcagcctctcagactttcataaatata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  aaagaaaactcaggactagatgaggtggccgctgcagcctctcagactttcataaatata 14

                        
Query: 305 tacagggcttcta 317
           |||||||||||||
Sbjct: 13  tacagggcttcta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no361_n09.g1 MSMg01no361_n09.g1 CHROMAT_FILE:
MSMg01no361_n09.g1 PHD_FILE: MSMg01no361_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:59 2005
         (546 letters)



>mm_chr19_18090201_18091146
          Length = 946

 Score = 1033 bits (534), Expect = 0.0
 Identities = 543/546 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatcaatgaacagcaagctcagatttgcagtcatttaataacccaagtcattttaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatcaatgaacagcaagctcagatttgcagtcatttaataacccaagtcattttaaga 260

                                                                       
Query: 61  aatggtcaacacaccttttcctttcaaaccaacagctagtaatttctagttaaaccaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatggtcaacacaccttttcctttcaaaccaacagctagtaatttctagttaaaccaagt 320

                                                                       
Query: 121 atgcagggccttgctgtgacatgtttggcttttgacctgatatgacagtggcagtggaga 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcagggccttgccgtgacatgtttggcttttgacctgatatgacagtggcagtggaga 380

                                                                       
Query: 181 atcaataaaaaatagacacaaggaacataaagctggggttggttgctctatgctctggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaataaaaaatagacacaaggaacataaagctggggttggttgctctatgctctggga 440

                                                                       
Query: 241 tggatacgtaccagctccagcagcccagaaactcattcctttattataaagagatggaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggatacgtaccagctccagcagcccagaaactcattcctttattataaagagatggaac 500

                                                                       
Query: 301 caggaggggagttagataatttcagtagaatgtctttataacagagcagcctcaggctgc 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggaggggagttagataattgcagtagaatgtctttataacagagcagcctcaggctgc 560

                                                                       
Query: 361 agtcacccgggagggggaagctattccatgcatactgattttagctaaaggtcaattgtt 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 agtcacccgggagggggaagctattccatacatactgattttagctaaaggtcaattgtt 620

                                                                       
Query: 421 tttacaaatccatacttggaccagagggaaggcttgccattctcaggaatctgagacatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttacaaatccatacttggaccagagggaaggcttgccattctcaggaatctgagacatt 680

                                                                       
Query: 481 ggtgtctctgacatggcaatgcctctgtcaataatcacattcccgcagggctttaatctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtgtctctgacatggcaatgcctctgtcaataatcacattcccgcagggctttaatctg 740

                 
Query: 541 ctctct 546
           ||||||
Sbjct: 741 ctctct 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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