BAC Information

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BAC

Clone NameMSMg01-363I10
Chromosome19 (Build37)
Map Location 10,518,548 - 10,518,781
singlet/doubletsinglet
Overlap geneSyt7
Upstream geneLOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla
Downstream geneGm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363I10.T7 (MSMg01no363_i10.b1)MSMg01-363I10.TJ (MSMg01no363_i10.g1)
ACCAG471944AG471945
length756737
length of high quality
(start - end)
253 (67 - 319)240 (74 - 313)
definitionCHROMAT_FILE: MSMg01no363_i10.b1 PHD_FILE: MSMg01no363_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:16 2005CHROMAT_FILE: MSMg01no363_i10.g1 PHD_FILE: MSMg01no363_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAACATCCGCGGAATTC
AATTCCCATTACACACATAATGGCTCACAACCATCTGTACAGCTACAGTG
TACTCATGTACATAAAAAAAAATCTTTTTTTTTAAAAAGAGAGACTTCCA
TGGTCCACACTGCAGCTGGAATCCACCTTGATGTCTGTTGTCCATGCTGC
TGCTGGCAGCCATATTGATATCCGTGCTCCATAACCACTCCTGGCTGTTA
GTTTCTAGGAATCTTCTTTTGCAGTGGTATCAATGACTGCAGACTCATAA
CTGAGAATGAAGGCTTATGNGTCATCTCTCTCCCCTCCTCCCATACACTC
CCCAAAGAAACAGTCCAGACAGGAAGCTATTGAAAAAAAAAGTCTTTTAA
AAATATGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA
GCGCAAGGCCCTGGGTTCGGTCCTCAGCTCTGGAAAAAAAATAATAAAAA
GACTAACATAACTTATAGACCTTCCAAAACAAGGTAACTGGCACCCACTC
CAATAAAAAAACATGACATTATTCTGGCTGTGGTGCCACAATTCTTTATT
CCCTTTTATTGTATAGCCTGGACTTTTCCATCCTCGATCGACAATTCACC
CCTGTCTCTCTATTTTTTTTTTTTTTTTTCTCCCATCCCTATATAACCAT
CTCCCCCCCCATTAATTGTCCATTTTAACCTCTTTTCTTCTTCCTTTACT
CTAGTT
NCCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGTCAAAAGAGAATTCCCTCCTTCCCTGTCTGGCTGGGT
CTTTCCTGGTTTGCTCATCCTTGGCCCCTGCTGCCTCCTCAGGGCAAACC
CTTTGGGCCTGGCTGTGCACCCCAGCCCAGTCCTACCTTGCCGATGACGT
CGTTGCGGCTGAGCTTGTCTTTGTCCATGACAGTGATGATGATCGTGGTC
TCCCTCAGCTTCTCCGTGGGTATGTCGAAGGCGAAAGACTCATTGAAGAT
GGGGTTCAGGTTCTTCTTCNNTGTCACGGNCTTCTTTTTCTCTACCCGCT
TGTCTTTATACATCAGCCACACCTTCACATAGGGGTCTGGTAGGTGATAG
TAGAGGAAGGGTCAGAGGGTCAGAGTGTGTATGTTGGGTGGGGGACTCAA
GGATCCTCATGCCCTTCCAGGTGCACCTAAGTGGGAGCTGGCTGTACGCT
TTTTAAGTGGGTGACGAGGCCAGGTTCGGCCAGAACAAGAGGGATTAGGG
ATCATTAGCATAAGGTAGAACCTAAAGAGACCCCGGCCCCTGCTTCCGTG
TTCTCATGCTGGTATAGGTCTTTCTAAGCAGATGGAGCTGGGTTTTTGTT
TCTTCTACCACACAGGTGCCTCTCTTCATATTTACGTCCCTTGCATCCTA
AATGGCCCTTTTCCTATCATGCCCCATTTTCCGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_i10.g1 MSMg01no363_i10.g1 CHROMAT_FILE:
MSMg01no363_i10.g1 PHD_FILE: MSMg01no363_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:16 2005
         (240 letters)



>mm_chr19_10518344_10518981
          Length = 638

 Score =  437 bits (226), Expect = e-127
 Identities = 233/236 (98%), Gaps = 2/236 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   cctccttccctgtctggctgggtctttcctggtttgctcatccttggcccctgctgcctc 64
           |||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||
Sbjct: 438 cctccttccctgtctggct--gtctttcctggtttgcttatccttggcccctgctgcctc 381

                                                                       
Query: 65  ctcagggcaaaccctttgggcctggctgtgcaccccagcccagtcctaccttgccgatga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctcagggcaaaccctttgggcctggctgtgcaccccagcccagtcctaccttgccgatga 321

                                                                       
Query: 125 cgtcgttgcggctgagcttgtctttgtccatgacagtgatgatgatcgtggtctccctca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cgtcgttgcggctgagcttgtctttgtccatgacagtgatgatgatcgtggtctccctca 261

                                                                   
Query: 185 gcttctccgtgggtatgtcgaaggcgaaagactcattgaagatggggttcaggttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcttctccgtgggtatgtcgaaggcgaaagactcattgaagatggggttcaggttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 638
Length adjustment: 9
Effective length of query: 231
Effective length of database: 629
Effective search space:   145299
Effective search space used:   145299
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)