NTTTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAAATTCTTGCGTCCTTGTTAGGCTAGCATTTGTTGGTCA
CTTGGCCTCACCTTGTCATATCTTTGAGGTAAGGGAACAGGATGGTACCC
AGTCTTCTGGCAGCTCACCCACGGCTCTTCAGATCTAGTAGATTACAGGC
CGCTGGAACCTGGCCTACTAGCTGATGCCTGCTTGATCCACTATTTACTT
GATTGCTCTTCTTTTGTCACTTAACACACACACACACACACACACACATA
GCTCAGCTAACCTCTTTCCCACTCATCCCAACACCAGGCTATAGACCATG
AGAGTTACCAAGCAGAAAAGTGCCCAAGAAGGCTAGAGTATTAGAATTCA
AAAGAAGGGTAAGTGTGAGCCTACTCCTGCTCAGAAAACTAAAACTTGAA
GAGCATGGCTCATTAGTAACAAAACTGACAACTAAGACCAGCATGACAAG
CTGTGGTCTCTTGACTAGGAAAGANNAAGGACCAGAGAGAACACATGTGC
TCAGAATTCTGGGTGCAAATCCCTACTGAATGGGCATGGGCGTGCCTGAG
AACTGGTTCCCTTTGTCTAAAAGGGGTGATGGGAAAGGGGTTTGGTGACT
GAACACCTAAACTGGATGCTTTGGACACGCCACAGGGGATTAAAGAAAAA
AATGGTCTTTTTCCCCCCCCCCTTTCCTTCCCCTTTTTTTGTTTGGTGGA
CCCCAATTTTTTCG

NTTTCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCAT
TTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTT
ATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGGTCA
TTTCCCAATCTTTTGGTGGCCTTTTTGTCTTATTGACGTTGTCTTTTGCT
TTGCAGAAGCTTAAGGGCACACTTTTCTAGGTGGGAGATATTAGTGCCCA
GCAATTGTGTCAGAAGGCAAGTTGAATATGAGCAATGTGTGTGTGTGTGT
GTGTGTGTGTGTCTGTCTGTCTGGCTGTCTGTCTGTCTGTCTGTGTTTTA
TCTGTGGATTCAAGGGAAGTTGGATGGGGGCTGGTAGCATGGCCCGTTCC
TGGAGCTTAAGCAGGCTGTAGAAAGTTACACACAACAGGCACAGGACAGA
GGACTAGAAACTCATGATCATCCTATTGCCATATAGCAAGTTTTAGAACA
GGCTAATCTAGAAACCCTGTCTCTGAAACCAATCCATAATAAGGACTTTG
CTTCCCACACAACTATCCCTTTCCAAATGGAAGGATTTATTTGGGATTTA
GCCCTGGATAAACTTTGGGAACGTCTCCCCCTCTCCTATTGAACCAATTG
TTGATAAATAAAAGTGGAAACTTTATTAAAAATTTTATCCCCTTTCCCCC
CCTTCTTCATGGGTCTGTTATTTTTCTTTTACA

Query= MSMg01no366_b20.b1 MSMg01no366_b20.b1 CHROMAT_FILE:
MSMg01no366_b20.b1 PHD_FILE: MSMg01no366_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:51 2005
         (472 letters)



>mm_chr19_59360439_59361310
          Length = 872

 Score =  758 bits (392), Expect = 0.0
 Identities = 419/434 (96%), Gaps = 10/434 (2%)
 Strand = Plus / Minus

                                                                       
Query: 39  atttgttggtcacttggcctcaccttgtcatatctttgaggtaagggaacaggatggtac 98
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 atttgttggtcacctggcctcaccttgtcatatctttgaggtaagggaacaggatggtac 813

                                                                       
Query: 99  ccagtcttctggcagctcacccacggctcttcagatctagtagattacaggccgctggaa 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 ccagtcttctggcagctcacccacggctcttcagatctagtagattacaggccgctggaa 753

                                                                       
Query: 159 cctggcctactagctgatgcctgcttgatccactatttacttgattgctcttcttttgtc 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 cctggcctactagctgatgcctgcttgatccactatttacttgattgctcttcttttgtc 693

                                                                       
Query: 219 acttaacacacacacacacacacacacacatagctcagctaacctctttcccactcatcc 278
           |||||           ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 692 actta----------gcacacacacacacatagctcagccaacctctttcccactcatcc 643

                                                                       
Query: 279 caacaccaggctatagaccatgagagttaccaagcagaaaagtgcccaagaaggctagag 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 642 caacaccaggctatagaccatgagagttaccaagcagaaaagtgcccaagaaggccagag 583

                                                                       
Query: 339 tattagaattcaaaagaagggtaagtgtgagcctactcctgctcagaaaactaaaacttg 398
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 582 tattagaattcaaaagaagggtgagtgtgagcctactcctgctcagaaaactaaaacttg 523

                                                                       
Query: 399 aagagcatggctcattagtaacaaaactgacaactaagaccagcatgacaagctgtggtc 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aagagcatggctcattagtaacaaaactgacaactaagaccagcatgacaagctgtggtc 463

                         
Query: 459 tcttgactaggaaa 472
           ||||||||||||||
Sbjct: 462 tcttgactaggaaa 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)