BAC Information

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BAC

Clone NameMSMg01-367A14
Chromosome19 (Build37)
Map Location 59,638,879 - 59,819,098
singlet/doubletdoublet
Overlap genenone
Upstream genePnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
Downstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367A14.T7 (MSMg01no367_a14.b1)MSMg01-367A14.TJ (MSMg01no367_a14.g1)
ACCAG474604AG474605
length771753
length of high quality
(start - end)		591 (49 - 639)534 (60 - 593)
definitionCHROMAT_FILE: MSMg01no367_a14.b1 PHD_FILE: MSMg01no367_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:04 2005CHROMAT_FILE: MSMg01no367_a14.g1 PHD_FILE: MSMg01no367_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,638,879 - 59,639,462)(59,818,565 - 59,819,098)
sequence
NCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGGTTCTGTTCACCCAACGACATTTTTATTCTTCCTTCATTT
AAAAAATGTTCCCATTGGGTATAAGTTCTGAACTGCCAGATTTTCTCCAC
CACATTTTTTTAAATCAATTGAAGGCAGTTGCTTCATTATATTCTAGCTT
GATGTGTGTCTATGACAATTCTCTTTTAAAAATCACCCTCTATCTTATTA
CCTACATGGTTGAGTTTTTGGTTTTTTGTTTTTATCTTGTTTTGTTTTCT
AACTCTTTTAGGTCTAATTAGTGTCTGTCATTCACTTGGTGAATCTTTGG
CTTTTATTTCTTCCACATTTTTTTTCCTGCTCATTTTCTCACAGTTCTTC
AGGTGTCTGCTGTAATTTGCTGAGTATTCATGCCTTTCCTTTCCTTCTAG
TATCTTGTTTGGCTCTAAATCTTTGATAAATTTGTTGTTTCTGACCCAGT
TCAATTCTGATTCAAAAAATGTAGTGGTTATAGAGCATGCCTGGATATTT
TTCCTTATTTAACAAGTAGAATAGATGCTGATTTTTAGTTTTTCCATCCC
TGAGTAGAAACAAGGAATCTACTACATAATTCTTGGGGAATATATCTTAT
TTTATTTATATGGCACACCTTTATTTAAAACTAATTTTTTTGGTATTTGG
GAGTTAAACTGCCTTAAAATATGTTTTGCTATTAAAACCGGATCAATATA
ATTTGAACAACATCCGAAACN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXATTCATAGGTAGGTATGACAACTGAATGTGGCACTGTGGAG
TCTTGTCCTCCGTGTGCCGAGACTATTTGCCCTCTAGTGGCCTAGTATGT
ATATGCAGAATGCCAATTCACTCATTCCTTCCTTCAGTTGGTCTGTCTGT
CAGCCACAGCCAGGAGACTACAGAGTCCATTGATAATGCTAAAACATAAA
TCAAATTAAGAGGTTTTTTTTTTCCATCCCCAGCTTTGAATAACTTTCAG
TTTCATGAAGGAGACAGACAGGAAACAAGCCAGCACTCATAATCATTGAA
GACTTTGACCAGGCCAGCGAAGGAAAGCCACTATGAGAAAAGCAGAGCAC
AGCTCACTTCTGTGGGGCAAGATTCACAGAAGCTTCCCAGAGGAATGTGG
GCCAAATAGCCAGTTAGACAAAAGGTGATGGAGGGCATTGTGGGAATAGT
GACAGACATATCTGAAGCTCTTTAGAGTGCAAAGACTCTAAAACATTCTC
AGAGGGACTATAGACTTGTGGTTAAGTCATTCAGTCTGATCCTAGCAGAC
TGTGTGNCAAACACACGGTTTCTCTTACTAGCTTGGTGACCTTAAGCAAA
AAAACTTCCTGTTTCACATCTCTAAATCAAAGTGTGCTAATACAGATGGG
ATCTCCCAGAGCCCACCACTCTTTTGGGGGCCCTCAAAGGTCCTAATAAG
GCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_a14.b1 MSMg01no367_a14.b1 CHROMAT_FILE:
MSMg01no367_a14.b1 PHD_FILE: MSMg01no367_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:04 2005
         (591 letters)



>mm_chr19_59638675_59639665
          Length = 991

 Score = 1129 bits (584), Expect = 0.0
 Identities = 584/584 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggttctgttcacccaacgacatttttattcttccttcatttaaaaaatgttcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggttctgttcacccaacgacatttttattcttccttcatttaaaaaatgttcc 264

                                                                       
Query: 65  cattgggtataagttctgaactgccagattttctccaccacatttttttaaatcaattga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cattgggtataagttctgaactgccagattttctccaccacatttttttaaatcaattga 324

                                                                       
Query: 125 aggcagttgcttcattatattctagcttgatgtgtgtctatgacaattctcttttaaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggcagttgcttcattatattctagcttgatgtgtgtctatgacaattctcttttaaaaa 384

                                                                       
Query: 185 tcaccctctatcttattacctacatggttgagtttttggttttttgtttttatcttgttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaccctctatcttattacctacatggttgagtttttggttttttgtttttatcttgttt 444

                                                                       
Query: 245 tgttttctaactcttttaggtctaattagtgtctgtcattcacttggtgaatctttggct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgttttctaactcttttaggtctaattagtgtctgtcattcacttggtgaatctttggct 504

                                                                       
Query: 305 tttatttcttccacattttttttcctgctcattttctcacagttcttcaggtgtctgctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttatttcttccacattttttttcctgctcattttctcacagttcttcaggtgtctgctg 564

                                                                       
Query: 365 taatttgctgagtattcatgcctttcctttccttctagtatcttgtttggctctaaatct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taatttgctgagtattcatgcctttcctttccttctagtatcttgtttggctctaaatct 624

                                                                       
Query: 425 ttgataaatttgttgtttctgacccagttcaattctgattcaaaaaatgtagtggttata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgataaatttgttgtttctgacccagttcaattctgattcaaaaaatgtagtggttata 684

                                                                       
Query: 485 gagcatgcctggatatttttccttatttaacaagtagaatagatgctgatttttagtttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gagcatgcctggatatttttccttatttaacaagtagaatagatgctgatttttagtttt 744

                                                       
Query: 545 tccatccctgagtagaaacaaggaatctactacataattcttgg 588
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tccatccctgagtagaaacaaggaatctactacataattcttgg 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no367_a14.g1 MSMg01no367_a14.g1 CHROMAT_FILE:
MSMg01no367_a14.g1 PHD_FILE: MSMg01no367_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:04 2005
         (534 letters)



>mm_chr19_59818365_59819298
          Length = 934

 Score = 1033 bits (534), Expect = 0.0
 Identities = 534/534 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcataggtaggtatgacaactgaatgtggcactgtggagtcttgtcctccgtgtgccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 attcataggtaggtatgacaactgaatgtggcactgtggagtcttgtcctccgtgtgccg 675

                                                                       
Query: 61  agactatttgccctctagtggcctagtatgtatatgcagaatgccaattcactcattcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 agactatttgccctctagtggcctagtatgtatatgcagaatgccaattcactcattcct 615

                                                                       
Query: 121 tccttcagttggtctgtctgtcagccacagccaggagactacagagtccattgataatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tccttcagttggtctgtctgtcagccacagccaggagactacagagtccattgataatgc 555

                                                                       
Query: 181 taaaacataaatcaaattaagaggttttttttttccatccccagctttgaataactttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 taaaacataaatcaaattaagaggttttttttttccatccccagctttgaataactttca 495

                                                                       
Query: 241 gtttcatgaaggagacagacaggaaacaagccagcactcataatcattgaagactttgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gtttcatgaaggagacagacaggaaacaagccagcactcataatcattgaagactttgac 435

                                                                       
Query: 301 caggccagcgaaggaaagccactatgagaaaagcagagcacagctcacttctgtggggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 caggccagcgaaggaaagccactatgagaaaagcagagcacagctcacttctgtggggca 375

                                                                       
Query: 361 agattcacagaagcttcccagaggaatgtgggccaaatagccagttagacaaaaggtgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agattcacagaagcttcccagaggaatgtgggccaaatagccagttagacaaaaggtgat 315

                                                                       
Query: 421 ggagggcattgtgggaatagtgacagacatatctgaagctctttagagtgcaaagactct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggagggcattgtgggaatagtgacagacatatctgaagctctttagagtgcaaagactct 255

                                                                 
Query: 481 aaaacattctcagagggactatagacttgtggttaagtcattcagtctgatcct 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aaaacattctcagagggactatagacttgtggttaagtcattcagtctgatcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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