BAC Information

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BAC

Clone NameMSMg01-368J01
Chromosome19 (Build37)
Map Location 44,780,325 - 44,780,969
singlet/doubletsinglet
Overlap genenone
Upstream geneEntpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an
Downstream genePax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368J01.T7 (MSMg01no368_j01.b1)MSMg01-368J01.TJ (MSMg01no368_j01.g1)
ACCAG475759AG475760
length737730
length of high quality
(start - end)		536 (43 - 578)645 (66 - 710)
definitionCHROMAT_FILE: MSMg01no368_j01.b1 PHD_FILE: MSMg01no368_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:02 2005CHROMAT_FILE: MSMg01no368_j01.g1 PHD_FILE: MSMg01no368_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCAAAATTACCGTTTTCAGTTCCACTCCCTAATTTTGCACTTTTTAA
CTGCCCAGATAATCCACTAATGGAGCCCATATCTAAGTTGAATGATGTGA
TGGTCTGAATAAGAATGGCTCCCAAAGGCTCGTATACCTGAATGCTTGGT
CACCAGGGAGTGGGACTCTTTGAAAGGGTTAGAAGGTAAGGAAGCATGTT
CGTGTTGGAGGATGTATGTCAATGGGGGTGGGGTTTAAGATCAAAAGCCC
ATGGCAGGCCCAGTCAGACTCTTATCCATCCGTCCTCCCTACCCACTCAC
AACCCAGATCAGGATGCAGCTCTCAACTACATCTCCATCATCATGCCTAC
AATGCTTGCCACCATGCTGATAATGGACCAAGCTTTTAAAACTGTAAGCA
CACCCCCAATGAACTGTTCCTGAGTTGTTACGGTCATGGTCTTTCTTCGG
AGCAATAAAATAGTGACTTAAGTCTGATGGGTTTATTTGTACTGATGCAG
GAGAAACACATTTTTCTTATGGGTCAGGTTTCCAAAGGAAATGAGGTTAA
CTTAAGAAAACGCTCTACTTTTATTCTCAGCCAAAGCTACACAGTAAGAC
TCTTGTCAAGAAGCAACCCCCTAAACAGAGTGGGCGTTGACTTCACTTGC
CACTGCAGATGAGCTGACATGCGGTCCGTGGTCACGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCATAAATTAATACACAAACTAGCCAGGCAGTGGTG
GCACACGCCTTTAATCCCAGCACTTAGGAGGCAGAGGCAGGTGGATTTCT
GAGTTCAAGGTCAGCCTGGTCTACAGAGTGAGTTCCGGAACAGCCAGGGC
TATACAAAGAAATCCTGTCTTCGAAAAAACAAAACAAAACAGACAAACAA
AAACAAAACATAAACTAGGCAGGGTGTAGCCAGGTTTGGTGGCATACACC
CATATACCGAAGACTCAGAGTTCTAGGCCATACTTATGTATGGTGGCTGA
GGAAGGGCTCCAGGTCCCCTCAAGGAGGAGAGGATCTGTGTTTTAGTGTC
CTGTTGCTGCTGCAATATGCCGCCACAAGCCTAGGGGCTTAAAACAACAA
AATTTAATGTCATACCCTCCTGTGGACTAGAGGTCTGAAGTTATTCTCAC
TGTGTTAGAGTCAAGGTGTGGGCAGGGCCTGTTCCTCCTTCTAAGGGTGT
CAGGGAGTTTGTGACCTTGCCGGTCCCACTACTGAAGGCGGCCCTCATTG
CCCAGGTCACAGCCTGGGCTTCATACATAATGAGATGGAGAGTAACAAAC
ACTACTCTACACACAATGTAAGAGGACTTAGAACTTTCCTGCTACTTTGG
AAGTGTTCAATGTTTTTTANAGTGCAGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_j01.g1 MSMg01no368_j01.g1 CHROMAT_FILE:
MSMg01no368_j01.g1 PHD_FILE: MSMg01no368_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:02 2005
         (645 letters)



>mm_chr19_44780278_44781322
          Length = 1045

 Score = 1193 bits (617), Expect = 0.0
 Identities = 638/645 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataaattaatacacaaactagccaggcagtggtggcacacgcctttaatcccagcactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cataaattaatacacaaactagccaggcagtggtggcacacgcctttaatcccagcactt 633

                                                                       
Query: 61  aggaggcagaggcaggtggatttctgagttcaaggtcagcctggtctacagagtgagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aggaggcagaggcaggtggatttctgagttcaaggtcagcctggtctacagagtgagttc 573

                                                                       
Query: 121 cggaacagccagggctatacaaagaaatcctgtcttcgaaaaaacaaaacaaaacagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cggaacagccagggctatacaaagaaatcctgtcttcgaaaaaacaaaacaaaacagaca 513

                                                                       
Query: 181 aacaaaaacaaaacataaactaggcagggtgtagccaggtttggtggcatacacccatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aacaaaaacaaaacataaactaggcagggtgtagccaggtttggtggcatacacccatat 453

                                                                       
Query: 241 accgaagactcagagttctaggccatacttatgtatggtggctgaggaagggctccaggt 300
           ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 452 accgaagactcagagttctaggccatacttacgtacggtggctgaggaagggctccaggt 393

                                                                       
Query: 301 cccctcaaggaggagaggatctgtgttttagtgtcctgttgctgctgcaatatgccgcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 392 cccctcaaggaggagaggatctgtgttttagtgtcctgttgctgctgtaatatgccacca 333

                                                                       
Query: 361 caagcctaggggcttaaaacaacaaaatttaatgtcataccctcctgtggactagaggtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 caagcctaggggcttaaaacaacaaaatttaatgtcataccctcctgtggactagaggtc 273

                                                                       
Query: 421 tgaagttattctcactgtgttagagtcaaggtgtgggcagggcctgttcctccttctaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgaagttattctcactgtgttagagtcaaggtgtgggcagggcctgttcctccttctaag 213

                                                                       
Query: 481 ggtgtcagggagtttgtgaccttgccggtcccactactgaaggcggccctcattgcccag 540
           ||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||
Sbjct: 212 ggtgtcagggagtttgtgaccttgccggtaccactactgaaggctgccctcattgaccag 153

                                                                       
Query: 541 gtcacagcctgggcttcatacataatgagatggagagtaacaaacactactctacacaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gtcacagcctgggcttcatacataatgagatggagagtaacaaacactactctacacaca 93

                                                        
Query: 601 atgtaagaggacttagaactttcctgctactttggaagtgttcaa 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  atgtaagaggacttagaactttcctgctactttggaagtgttcaa 48


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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