BAC Information

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BAC

Clone NameMSMg01-369B05
Chromosome19 (Build37)
Map Location 20,705,858 - 20,706,301
singlet/doubletsinglet
Overlap geneAldh1a1
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549
Downstream geneAldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369B05.T7 (MSMg01no369_b05.b1)MSMg01-369B05.TJ (MSMg01no369_b05.g1)
ACCAG476151AG476152
length740783
length of high quality
(start - end)
343 (17 - 359)444 (65 - 508)
definitionCHROMAT_FILE: MSMg01no369_b05.b1 PHD_FILE: MSMg01no369_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:42 2005CHROMAT_FILE: MSMg01no369_b05.g1 PHD_FILE: MSMg01no369_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATACGACTCCTATATGGAGAGGATCCGCGGAATTCTGGGGACTTTCCAG
AGGATGTATAAATTGCTAGGTCCCTGAGAGGCAGTGGGGGTTAGAGAAGT
CCAAAAATAACACTGGCCCCTTCCCCTCTATCGTTTTTTTCTCTCCTATC
TAGTATTAGGCATTTGAAAGGGTGGGAAAAGGTGGAGAAAGGTAGAAGAA
AGAATGCAGAAACTTGTAAAAGACTGTTTGCAACTACCTGGTCTCCTGCT
ATGTTCCCATTCCTTCACTGCAAAAAAACATGCCTTCTCTACCATGATAG
AATGCTCTTCCCAAACTGTAAGCCAAGACAAATCTTTTCTTCTTGAAGTT
GCTTTTGTGTTTTATCATATCGACACGCAAAGCTACTAGAAATAACAGAC
AGCAACTCACAGTGCTGGAGGCTAGGAAGCCCAAGACCGAGGACACACAT
TTGGGGAGGTCCTTCTTGGTGGATCCTAAGTTGAAACATGGCACCCAGGG
ACCGGAAAATGACCCTGGAAATGAACTCCCTTTTTTAAAGGGGAGGCTCC
TTTTTTGGGAAAACCCATTTCCTGGGAGAAAAATTTTTTAAAGGGCCCCC
TTCCTTTTGGTTTTTTAACAGCTCTTCCCCCCCCCCACGGGGGCGTGTGA
GAAATACCACCTTTTCCCTCCTTGCCCCGCTTTGGGCGCTTTCTTTTTCC
GCCCCTCTTCTTTCGCGTTGTTTCCATCTTCTTTTCGTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCATACACATTGCACTGTCATGAACACCACATAGACA
AAAGAAGAAAGAAAAAATAGACAATATTATCAATTGTTTGCTTTCTTCAA
TCTGTATGCTTTTGATTCCTATTACAATTCTTAGACCTCTTGGAAATCCA
TATATATTTCTCTCATTTCTCCCTTGTAATCAGTCTTCCACCTCAGCCAT
TATTCTATGAGTCTAAGCAGGAAAGCAGACCTGAGTACTCAGCAGTGTCC
TCATTCTCTCTGACATATGAGGTCATCAATGGTTCTTGCAAGTCCTGTTT
CTGGCACACTTCTGACAAGCTTCTCCCTTTAGTTATCAAAAGCTAGGGTT
TCCCTAGGGGCTCTGGGTATTCTGTGTCATTAGATCTACTGTAAATATGA
ATGTCTTTGTCTTTCTCACTTAAGCCACATTTTCCTCTTGCATAGCTTTT
ATTCATGGTCTGGTATAATCTGCTGTTCAAGATTTTGGTCCTGTGATTCT
GAGTTCACTCCCTACTCTGGATCCTGGTCTAAAACAGGGATCCTCCCCCC
GAGGGCCTTTCCCCCCGGGATATCGTTAATTTTATCTGGAAAAAGGTTTA
ATCTGGTATTAACAACATGGTTATTATTTTCCTCCTTTTGTTATTTTTTT
GTAACGCCAACAATACACCTGCTTGACTACCTTCCCCGGGACAAAGAATA
ATCTTCCCTTTCCAACAAACTCTCATATTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_b05.g1 MSMg01no369_b05.g1 CHROMAT_FILE:
MSMg01no369_b05.g1 PHD_FILE: MSMg01no369_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:42 2005
         (444 letters)



>mm_chr19_20705658_20706501
          Length = 844

 Score =  835 bits (432), Expect = 0.0
 Identities = 441/444 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catacacattgcactgtcatgaacaccacatagacaaaagaagaaagaaaaaatagacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacacattgcactgtcatgaacaccacatagacaaaagaagaaagaaaaaatagacaa 260

                                                                       
Query: 61  tattatcaattgtttgctttcttcaatctgtatgcttttgattcctattacaattcttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattatcaattgtttgctttcttcaatctgtatgcttttgattcctattacaattcttag 320

                                                                       
Query: 121 acctcttggaaatccatatatatttctctcatttctcccttgtaatcagtcttccacctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctcttggaaatccatatatatttctctcatttctcccttgtaatcagtcttccacctc 380

                                                                       
Query: 181 agccattattctatgagtctaagcaggaaagcagacctgagtactcagcagtgtcctcat 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccattattccatgagtctaagcaggaaagcagacctgagtactcagcagtgtcctcat 440

                                                                       
Query: 241 tctctctgacatatgaggtcatcaatggttcttgcaagtcctgtttctggcacacttctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctctgacatatgaggtcatcaatggttcttgcaagtcctgtttctggcacacttctg 500

                                                                       
Query: 301 acaagcttctccctttagttatcaaaagctagggtttccctaggggctctgggtattctg 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 acaagcttctccctttagttatcaaaagctagggtttgcctaggggctctgggtattctg 560

                                                                       
Query: 361 tgtcattagatctactgtaaatatgaatgtctttgtctttctcacttaagccacattttc 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 tgtcattagatctactgtaaatatgaatgtctttgtctttctcactcaagccacattttc 620

                                   
Query: 421 ctcttgcatagcttttattcatgg 444
           ||||||||||||||||||||||||
Sbjct: 621 ctcttgcatagcttttattcatgg 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)