Query= MSMg01no369_l13.b1 MSMg01no369_l13.b1 CHROMAT_FILE:
MSMg01no369_l13.b1 PHD_FILE: MSMg01no369_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:31 2005
(433 letters)
>mm_chr3_73887412_73888245
Length = 834
Score = 770 bits (398), Expect = 0.0
Identities = 424/434 (97%), Gaps = 4/434 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaatcctattcatttgtcctttcatcaaaaatcttaaaaacaggttacaaatga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ggaattcaatcctattcatttgtcctttcatcaaaaatcttaaaaacaggttacaaatga 733
Query: 64 aactacttctcagcttctacatgattatcttcattcctatatttatcaacttac---aaa 120
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 732 aactacttctcagcttctacatgataatcttcattcctatatttatcaacttacaaaaaa 673
Query: 121 aaaaaaaagtaaaaagaaaagaaaaaaaaacagaaaaatacaaatcatcaaatcgtaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aaaaaaaagtaaaaagaaaagaaaaaaaaacagaaaaatacaaatcatcaaatcgtaatt 613
Query: 181 gaggattttgttgagcttttaaactttgtgggtttgacttctgtatttggaggcagaacc 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 612 gaggattttgttgagcttttaaactttgtgggtttgatttctgtatttggaggcagaacc 553
Query: 241 ctgtgtc-gaaagagggtctgtgatgccatgtattttccgtgttgctggaaggaaaatca 299
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 552 ctgtgtctgaaagagggtctgtgatgccatgtattttctgtgttgctggaaggaaaatca 493
Query: 300 tagatgtaagttccaactttctctcttggttgagacagtttccttttttcccattgaatg 359
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 492 tagatgtaagttccaactttctctcttgtttgagacagtttccttttttcccattgaatg 433
Query: 360 tgataaggcaggtaggcccgaggcctcccaggattttcatgaatcatccctctacctccc 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 432 tgataaggcaggtaggcccgaggcctcccaggattttcatgaatcattcctctacctccc 373
Query: 420 ataactatgctgca 433
|||||||||||||
Sbjct: 372 gtaactatgctgca 359
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 834
Length adjustment: 9
Effective length of query: 424
Effective length of database: 825
Effective search space: 349800
Effective search space used: 349800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no369_l13.g1 MSMg01no369_l13.g1 CHROMAT_FILE:
MSMg01no369_l13.g1 PHD_FILE: MSMg01no369_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:31 2005
(478 letters)
>mm_chr19_20464303_20465181
Length = 879
Score = 878 bits (454), Expect = 0.0
Identities = 473/482 (98%), Gaps = 7/482 (1%)
Strand = Plus / Minus
Query: 1 aactacaggatttacggtttgttgcaaataccatgtcttagctaatcctgctgcaaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aactacaggatttacggtttgttgcaaataccatgtcttagctaatcctgctgcaaaatt 620
Query: 61 agactgtgtgcttatcttttagacgttacaaaatcataaagttttgcctttcttaactaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agactgtgtgcttatcttttagacgttacaaaatcataaagttttgcctttcttaactaa 560
Query: 121 gaaatgcatgtctgaaagtctggcaagtttactgtcctgctgatgagttactaaaggagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaaatgcatgtctgaaagtctggcaagtttactgtcctgctgatgagttactaaaggagc 500
Query: 181 aa----aaagtgtgctctggcaagctaagagtgaggattttctttcctcctctttggaaa 236
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaagagaaagtgtgctctggcaagctaagagtgaggattttctttcctcctctttggaaa 440
Query: 237 agttttccaaagagctgtgagttttgtgtgggtccagagctggagtgggaaggcaagtgg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agttttccaaagagctgtgagttttgtgtgggtccagagctggagtgggaaggcaagtgg 380
Query: 297 gggtcccacagaaaccacaaatggaaaactctcaagaactgttccaaaatggaaggcttt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gggtcccacagaaaccacaaatggaaaactctcaagaactgttccaaaatggaaggcttt 320
Query: 357 cacagctaaaaatatttttctttaattaaaaccaaatgaatcccaggctctgagtggccc 416
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct: 319 cacagctaaaaatatttttctttaat-aaaaccaaatgaatcccaggctccgagtggtcc 261
Query: 417 tttttaattagcgttttgaatcaatgttatgtttactcacactttaagatggtccgctta 476
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 260 tttttaattagcgttttgaatcaatgttatgtttactcac--tttaagatggtccgctta 203
Query: 477 tt 478
||
Sbjct: 202 tt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 879
Length adjustment: 10
Effective length of query: 468
Effective length of database: 869
Effective search space: 406692
Effective search space used: 406692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
