Query= MSMg01no370_m07.b1 MSMg01no370_m07.b1 CHROMAT_FILE:
MSMg01no370_m07.b1 PHD_FILE: MSMg01no370_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:55 2005
(356 letters)
>mm_chr19_37794558_37795314
Length = 757
Score = 632 bits (327), Expect = 0.0
Identities = 346/353 (98%), Gaps = 3/353 (0%)
Strand = Plus / Minus
Query: 5 gaattctgttcacctctttgtcagcttaaggtcagcctaagctatgagagtcgttgactc 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 476 gaattctgttcacctctttgtcagcttaaggtcaacctaagctatgagagtcgttgactc 417
Query: 65 aaaaattacttagttaatttaaaaaagagcaaagcctctaggagaagaccttggtggctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aaaaattacttagttaatttaaaaaagagcaaagcctctaggagaagaccttggtggctt 357
Query: 125 tgcatcaggcaaaagtttccagtgttagaggtctagtcgtagagtggagcatatgctaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tgcatcaggcaaaagtttccagtgttagaggtctagtcgtagagtggagcatatgctaag 297
Query: 185 ggcaggtgacgttcagtctcacaccacaagg-aaaaaaaaaaaaacaatgtcattgatat 243
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 296 gacaggtgacgttcagtctcacaccacaaggaaaaaaaaaaaaaacaatgtcattgatat 237
Query: 244 gatgcaagagtgtgacccatttaagaaaaaaaaatatctaggtctggagttatggctcag 303
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 236 gatgcaagagtgtgacccatttaag--aaaaaaatatctaggtctggagatatggctcag 179
Query: 304 tgattaagagaacgggctgtttctcagtacccacatggtggctcacaaccatc 356
|||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tgattaagagaaagggctgtttctcagtacccacatggtggctcacaaccatc 126
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 757
Length adjustment: 9
Effective length of query: 347
Effective length of database: 748
Effective search space: 259556
Effective search space used: 259556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_m07.g1 MSMg01no370_m07.g1 CHROMAT_FILE:
MSMg01no370_m07.g1 PHD_FILE: MSMg01no370_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:55 2005
(297 letters)
>mm_chr19_37628105_37628801
Length = 697
Score = 516 bits (267), Expect = e-151
Identities = 290/299 (96%), Gaps = 4/299 (1%)
Strand = Plus / Plus
Query: 1 actagaattctcttccatcagctttctgagtgccgagattacaaagattggccaccaact 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actagagttctcttccatcagctttctgagtgccgagattacaaagattggccaccaact 260
Query: 61 ctggaaaaaaacactttcaaaacacacctgtgttctctgtcactggttttcctagtatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggaaaaaaacactttcaaaacacacctgtgttctctgtcactggttttcctagtatgg 320
Query: 121 ttttaactactggttacagtttcaacttttagccagtgaatatgtttcacttcgaaacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttaactactggttacagtttcaacttttagccagtgaatatgtttcacttcgaaacta 380
Query: 181 ctggggcagtattgtga--agctactagtgaagctcacaacacacagccttctgtagtta 238
|||||||||||||| | || |||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ctggggcagtattgccatcag--actaatgaagctcacaacacacagccttctgtagtta 438
Query: 239 caagcatcttttgtacacgttcataaagtggagcaaactgaaagtgaagtcactttcag 297
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caagcatcttttgcacacgttcataaagtggagcaaactgaaagtgaagtcactttcag 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
