BAC Information

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BAC

Clone NameMSMg01-372B02
Chromosome19 (Build37)
Map Location 14,982,307 - 14,982,815
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1505, EG667433, Tle4
Downstream geneEG433225, EG635497, Pomc-ps1, LOC667482, Psat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372B02.T7 (MSMg01no372_b02.b1)MSMg01-372B02.TJ (MSMg01no372_b02.g1)
ACCAG478420AG478421
length634751
length of high quality
(start - end)
---509 (73 - 581)
definitionCHROMAT_FILE: MSMg01no372_b02.b1 PHD_FILE: MSMg01no372_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:44 2005CHROMAT_FILE: MSMg01no372_b02.g1 PHD_FILE: MSMg01no372_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATTTCTCTTCCCCGGGNNACAGGATCGAGAGAGGAAACAACAGACGGT
GCGCATTTATTAAACAGAGACAGCCGAAGTGGGGGGGGCGGAGCGGGCCG
CATGGGCGAGGGGCCCCTCCGCCTCTCCCCTCTCCCCCCCCCGCCACACA
CACACATTTTGGGCGGGCACGAAGGCATTGCGCCGGGTCTCCTTTAGTTT
GATTCTCTGCGTTAGTTCACCTTCCGGGGGCCGGTTGGGTTACACGGTAC
GCCTTAAAAGGACCTACACGCCAGCGAACCTTTAACCTCCCATTATTATT
TTTAAACCCCTTCCCCCCATTCGTCCCCTTCCCCCNCCCCAXXXXXXXXX
XXXXXXXXXXXXXXXXXXNATGCCGACGATCCGCGGAATTCTTTGTTTGT
CATGAGCCTCATTTTTTAATGGGGTTATTTGATTTCTGAAGTCAACTTCT
TGAGTCTTTAAAAAGTTGGAATTAGCCCCCTATCTGATTAAGGAAAGGAA
AAGACCCTTTCCCCAACGGGGGGGGGGCTTTTTGGCCTAATGGGAGGGGG
GCTTTTGGGCCTGGGGAAAAAAAATTGGGGAGGAGTCCCAATAAGGGGCC
CCCATTTGGGGGCAAAAATTCCCCGCGGAAATTA
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGAAGCTAGCACCTTTTTATGGAAGG
GATATATTCCAGGGATCATGGACTCACATTACTGCCACAAAGGCACTTTC
TAGAGAGAAGACACAAAGATAGTAAAGGGAGATAAACACATGCAACTTAC
AGACCAGCTCCAATACAGGAGTCATCAGAAAAAAAAATGTGAATGAAGAG
GAAAGAGTTCTTTTTATACTTTCCACAGTTGTACGACCCTGAGAACTATC
TAATACAAAAATCTGTGAAATGGATCTTGTCATTTTCCATATGTAGCGAA
CTGGAGGACGAGTGAACTTAGTCTCTGGAGAACAACTTGGTACAATCTAA
TCAAGGCATAGTGCACACATATACATTTTTCTCCTGAGAATGTTTTACAA
AATTTGCATTCTCTAAACAGAGCCATAAAGAAATAAAAAGAAGGGCTGGA
GAGACGGCTCAGCCCATAAAGGCTAGGCTTACAACCAAAGATATAAGAAA
TAGAAAGATGATCATGGCAACTGATACAAAGTGACACAGGTTCAGGCCTG
GGAGAAAGGGAACAATATCAGGGGATTTCAAGAGGGGCTATGAAGGATAC
CCCAGCAATACCTACACTTGANCCATTGACTACTTAAAAAAAAACAGGGA
GGGGCCCAACCCCGCACGGGTCCGCAAAAAAAATTGTTACTGGATGGTTC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_b02.g1 MSMg01no372_b02.g1 CHROMAT_FILE:
MSMg01no372_b02.g1 PHD_FILE: MSMg01no372_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:44 2005
         (509 letters)



>mm_chr19_14982107_14983015
          Length = 909

 Score =  969 bits (501), Expect = 0.0
 Identities = 507/509 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaagctagcacctttttatggaagggatatattccagggatcatggactcacattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 caggaagctagcacctttttatggaagggatatattccagggatcatggactcacattac 650

                                                                       
Query: 61  tgccacaaaggcactttctagagagaagacacaaagatagtaaagggagataaacacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tgccacaaaggcactttctagagagaagacacaaagatagtaaagggagataaacacatg 590

                                                                       
Query: 121 caacttacagaccagctccaatacaggagtcatcagaaaaaaaaatgtgaatgaagagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 caacttacagaccagctccaatacaggagtcatcagaaaaaaaaatgtgaatgaagagga 530

                                                                       
Query: 181 aagagttctttttatactttccacagttgtacgaccctgagaactatctaatacaaaaat 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 529 aagagttctttttatactttccacagttgtacaaccctgagaactatctaatacaaaaat 470

                                                                       
Query: 241 ctgtgaaatggatcttgtcattttccatatgtagcgaactggaggacgagtgaacttagt 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ctgtgaaatggatcttgccattttccatatgtagcgaactggaggacgagtgaacttagt 410

                                                                       
Query: 301 ctctggagaacaacttggtacaatctaatcaaggcatagtgcacacatatacatttttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctctggagaacaacttggtacaatctaatcaaggcatagtgcacacatatacatttttct 350

                                                                       
Query: 361 cctgagaatgttttacaaaatttgcattctctaaacagagccataaagaaataaaaagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cctgagaatgttttacaaaatttgcattctctaaacagagccataaagaaataaaaagaa 290

                                                                       
Query: 421 gggctggagagacggctcagcccataaaggctaggcttacaaccaaagatataagaaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gggctggagagacggctcagcccataaaggctaggcttacaaccaaagatataagaaata 230

                                        
Query: 481 gaaagatgatcatggcaactgatacaaag 509
           |||||||||||||||||||||||||||||
Sbjct: 229 gaaagatgatcatggcaactgatacaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)