Query= MSMg01no372_c22.b1 MSMg01no372_c22.b1 CHROMAT_FILE:
MSMg01no372_c22.b1 PHD_FILE: MSMg01no372_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:52 2005
(482 letters)
>mm_chr19_23795688_23796563
Length = 876
Score = 832 bits (430), Expect = 0.0
Identities = 464/478 (97%), Gaps = 6/478 (1%)
Strand = Plus / Plus
Query: 5 gaattcatcagggattactaccaaagtgcacactgtagctctatctcagcaacaagggct 64
||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcagggataagtaccaaagtgcacgctgtagctctatctcagcaacaagggct 264
Query: 65 gtgctctcaaggctggagaagtcgggggtgtgggggggaaacgggtccagtctcctttct 124
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||
Sbjct: 265 gtgctctcaaggctggagaagtcgggggtgaggggg----atgggtccagtctccttcct 320
Query: 125 tctgacatccaccccttcagaggagccgtgattcctctgtgtgtacaccttctcttacct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgacatccaccccttcagaggagccgtgattcctctgtgtgtacaccttctcttacct 380
Query: 185 tgccagtccattccctactttccgtcactcactggcccgtatttttttctcatgttcttt 244
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 tgccagtccattccctactttccgtcactcactggcccatatttttttctcatgttcttt 440
Query: 245 tttttttttttcagggatgccaacagaagctattattactgttataatagcttaatacct 304
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttttttt--cagggatgccaacagaagctattattactgttataatagcttaatacct 498
Query: 305 atctataaacacagggagtatgagtaaaaggtgtccctctcaaattcccttttcatggct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atctataaacacagggagtatgagtaaaaggtgtccctctcaaattcccttttcatggct 558
Query: 365 gtcttggttagggttcctattgctgtaatgaaatgccgtgaccaggagctgagtcagtgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtcttggttagggttcctattgctgtaatgaaatgccgtgaccaggagctgagtcagtgg 618
Query: 425 ccatggaggagtgctgcttactgtcttgctctatggcttgcttgttcagttttcttgt 482
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 619 ccatggaggagtgctgcttactgtcttgctctatggcttgcttgttcaattttcttgt 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 876
Length adjustment: 10
Effective length of query: 472
Effective length of database: 866
Effective search space: 408752
Effective search space used: 408752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_c22.g1 MSMg01no372_c22.g1 CHROMAT_FILE:
MSMg01no372_c22.g1 PHD_FILE: MSMg01no372_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:52 2005
(373 letters)
>mm_chr19_23974480_23975252
Length = 773
Score = 669 bits (346), Expect = 0.0
Identities = 365/372 (98%), Gaps = 2/372 (0%)
Strand = Plus / Minus
Query: 1 ttggcagtggtccgattctttttacttgtccttggaggcttgacaacacagcagccaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttggcagtggtccgattctttttacttgtccttggaggcttgacaacacagcagccaggt 502
Query: 61 caacagggcaagatgctgctaatgagtcttaattaattagcatgtgcatctgaccttggt 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 caacagggcaagatgctgctaatgagtcttaattaattaacatgtgcatctgaccttggt 442
Query: 121 ggacagtctcctagcaaccgttaaaagaaaaatcagaatccttgtgggccgtatgctgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggacagtctcctagcaaccgttaaaagaaaaatcagaatccttgtgggccgtatgctgaa 382
Query: 181 ttcaggatagagagggggtagcatcaagacatctaagacccaggtgaagccgggacatcg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 ttcaggatagagagggggtagcatcaagacatctaagacccaggtgaagccggggcatcg 322
Query: 241 cccaatgcttttttccagcagcttacaggtgttgatcggggcaggtactaaccttgggcc 300
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 cccaatgcttttttccaccagcttacaggtgttgatcagggcaggtactaaccttgggcc 262
Query: 301 tttacttcccacagtgttgagaatgcctctctttcagcaaggaggaggctggtttctgac 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttacttcccacagtgttgagaatgcctctctttcagcaaggaggaggctggtttctga- 203
Query: 361 tctgactgagca 372
|| ||||||||
Sbjct: 202 -ctaactgagca 192
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
