AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCGGCGGAA
TTCTTTGTTCATTCCCGAAAACCATTTTTGAAGTGGGGTTGTTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTGGGATATTAGTCCCCT
ATCTGATTTATGTAAAGATCCTTTCCCTTTCTGTTGGTGGTCTCTTTGAC
TTATTGACGGCGTCTTTTGCCTTGCAGAATCTTTGCAGCTTCATTAGGTC
CCATTTGTCAATTCTCGATCTTACCGCTCAAGCCATTGCTGTTCTGTTCA
GGAATTTTTCCCCTGTGCCCATTTTTTTTTTTTTTTTCCCCACTTTCTCC
TCTACAAGTTTCACCCGTCTCCGGCTCTATGTCGACGCCCTTCTACCCCT
TTTCTATTTGACCTTAACACCCAGCGTATATCATGGACCCCATTCTCATT
TCTTCTACACCTATAACCCATCCTGCTGTGACTATTCTCATTTTTCTGTA
CTATGTCCGTTTTTTCTTCCCTCTCGAATGGTTTATTTTTTCCTCTTGGT
TTCACTCACTTAGTGTCTACTTTATACTGTGCCTGTCTCTCACTTCTCTT
ACTCCTTCTCTCCTTATTCCATCCTCTTCTTCTCACGTTTCCTTTTTTCT
ATTTTTCTCCTCTGCCCTTTTTTAATCCACATCTTTTTCCCTTCTTCGCC
ACCCTTTACTCCTTACAGGTTATCCATTCCCTATACCCTCTCTCAATTCT
TCCCTCTTTTACCTATCTACTCATCCCTCTCCTTTTCTTCATATATTCCA
CCTTTTCTCTTTCTCTCTATCCTCCTCTCCTCACCCTCCCCTCTTATTTA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATGAGAGGGGTCTAGGAGGGGG
AGCAGCATTTGGGATGTAAATAAATAAATAAATAATAAAAAATTTCTTTT
AGAAAGTAGATGCATTTTTTTTTCTATATACTATGGACTGGTCCCATCAA
ACCCTCCACAAAAGCAAGTAAAATATACTTGTTTGTCCAAACCATAGACT
GTGCTTCTGTGGCCCAGGGCCTGGGTGTGGTTTTACAAATGTGCTCCTGT
AGCATCACATGATTCCTAGCACAACGATGTGCCTCTTTGGACGGACAGAT
CCACTCATGCAGCTCTGGCATTCCCCCGTTTTAGTTTTATTAAGTAAGTC
CTAACATCATTTGGTATATACTACCCTTTATCCTTTCTGTGATAGGCATT
TTGTGTTACCATGAGATTGAATGAGTCTTACAGCTAACTTTTATTATGAC
TGATTTCTCACTGAGTTAAGTGGCTGGCTTGCTATCTTAATATGGTTGAG
ATAATTACTATATTTTGGCTATAATAAGTAAAGAATTAAAACAAAGAAAA
CTTTGCAGCTGAAATGAACAGAAACTCTTATTAACCAAGCCATACTCATA
CTTGATGCTTGTGCACGTCACATACGCTTGTTAGATTGCCCGTTTTTAAC
CCCGGTTATTCCCTCTTGAAAATTTGAAATCCACCTTCCCTGTACAACTC
CCATGTGTAACTTTCCCTCCCGGTTAACCCTAATGTG

Query= MSMg01no374_k03.g1 MSMg01no374_k03.g1 CHROMAT_FILE:
MSMg01no374_k03.g1 PHD_FILE: MSMg01no374_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:56 2005
         (476 letters)



>mm_chr19_15548495_15549369
          Length = 875

 Score =  884 bits (457), Expect = 0.0
 Identities = 472/477 (98%), Gaps = 3/477 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgagaggggtctaggagggggagcagcatttgggatgtaaataaataaataaat-aat 59
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 739 tatgagaggggtctaggagggggagcagcatttgggatgtaaataaataaataaataaat 680

                                                                       
Query: 60  aaaaaatttcttttagaaagtagatgcatttttttttctatatactatggactggtccca 119
            ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 679 -aaatatttcttttagaaagtagatgca-ttttttttctatatactatggactggtccca 622

                                                                       
Query: 120 tcaaaccctccacaaaagcaagtaaaatatacttgtttgtccaaaccatagactgtgctt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaaaccctccacaaaagcaagtaaaatatacttgtttgtccaaaccatagactgtgctt 562

                                                                       
Query: 180 ctgtggcccagggcctgggtgtggttttacaaatgtgctcctgtagcatcacatgattcc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtggcccagggcctgggtgtggttttacaaatgtgctcctgtagcatcacatgattcc 502

                                                                       
Query: 240 tagcacaacgatgtgcctctttggacggacagatccactcatgcagctctggcattcccc 299
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcactacgatgtgcctctttggacggacagatccactcatgcagctctggcattcccc 442

                                                                       
Query: 300 cgttttagttttattaagtaagtcctaacatcatttggtatatactaccctttatccttt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgttttagttttattaagtaagtcctaacatcatttggtatatactaccctttatccttt 382

                                                                       
Query: 360 ctgtgataggcattttgtgttaccatgagattgaatgagtcttacagctaacttttatta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgataggcattttgtgttaccatgagattgaatgagtcttacagctaacttttatta 322

                                                                    
Query: 420 tgactgatttctcactgagttaagtggctggcttgctatcttaatatggttgagata 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgactgatttctcactgagttaagtggctggcttgctatcttaatatggttgagata 265


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 875
Length adjustment: 10
Effective length of query: 466
Effective length of database: 865
Effective search space:   403090
Effective search space used:   403090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)