BAC Information

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BAC

Clone NameMSMg01-374O11
Chromosome19 (Build37)
Map Location 19,218,552 - 19,385,589
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
Downstream geneLOC100042218, LOC100041541
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374O11.T7 (MSMg01no374_o11.b1)MSMg01-374O11.TJ (MSMg01no374_o11.g1)
ACCAG480586AG480587
length758744
length of high quality
(start - end)		638 (76 - 713)583 (60 - 642)
definitionCHROMAT_FILE: MSMg01no374_o11.b1 PHD_FILE: MSMg01no374_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:18 2005CHROMAT_FILE: MSMg01no374_o11.g1 PHD_FILE: MSMg01no374_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,218,552 - 19,219,189)(19,385,099 - 19,385,589)
sequence
NNTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGAGACGATCCG
CGGAATTCATGAAATTTCTAAACAAATAGATGTATCTGGAGGATATCATC
CTGAGTGAGGTAACCCAATCACAAAAGAACACACATGATATGCACTCACT
GATAAGTGGATATTAGCCCAGAAATGTAGAATATCAAAGATACAATTTGC
AAAACACATGAAACTCAAGAAGAAGGAAGACCAAAGAGTGGATAGTTCGT
TCCTTCTTAGAATGTGAAACAAAATACCCATGGAAGGAGTTACAGAGACA
AAGCTCAGAACTGAGATGGAAGGTTATATCATCTGTTCCAGGTTATTATC
TTCACTTGGAGTCCTCTGTGTCTGTAGAAGAAAGTGAAGAATGGATTAGG
TAGTTTCAAGGGAGCTCCATGGCTGACGGTACAGTTGTGTACTCTGTTCA
GGCTATTCGCTTTGCCACTATGGGGATGAAACGCTCTTTAGAATAAAATG
GGCATTGCTAACTTTGTTGCCAGTTTTTATTAGATTAACTCTTAATTTAA
ATTTTGATAAACTTGAGAATTTCATATACAAGTCCTGTAATTACATCATT
TTCACTTCCTCCTCTTTCCCCTAACTTCTCCCTCCTCTTCCTCTTTCTCA
CATTCATGACCTCATCTTCTTTACCATTGCCATATTAATGCATGCGTACA
CGTGTGACTGCAGCCTGCTGAATTCATTTACTGTTGCTCATCTGTATATA
TGTTTAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTGATGAATTTGGACAATGAAAAGTCAGAGGGGGAAACCTG
AAGTTTAGTTAAAGAAAGAAAATACTTTTTAATTTTTAATCAATTTGTTT
CATGTGTATGGGCATTTTGCCAGCGTGTATATCTCTGGGCTATACTACAT
GTATGCCTGGTACATGAGGAGGCCAGAAAAGGGTGTCAGGCTTCCTGGCA
TTGAAGTTATAGACAGTTGTGAGCTGTCATATGGGTGCTGAGCATTGAAC
TTCGGGAAGAACAGCCAGTGCTTGTAAGCACTGAGCCTTCTCATCAGCCC
TGTTTTAGTCAGTGTTCATTGGTAGTAAATAAATGGTGACTAAAAACCAA
TAATTTTAACAATAATTTTGGCCTCAAACTACCAGTAGCCATCTCACTAG
TTCTGGGGTCTAATCTCTGGCACTAGTCCAAGCTACTGTGGCAACATCCT
AGGGAAATGGGAAGTTTCTAGATTTTAAAAAGAAAACAAAAATTGCTTTT
TAGCGCTCCCCTGTTCCCTCTATACATTGCTTTTAAGATATTGTAAAAAT
CTTCAAATAATGCCAGAATTTAAAAGATGTATTTTTGAGAGTGAGTGTAG
AGTGTTAAGCCCGATGGGACATCTGTATCATTTCCCTCTCCTTCTATGCT
GAGATATAGGTGATGGCAAACAGACTGATAGAATCTTGAAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_o11.b1 MSMg01no374_o11.b1 CHROMAT_FILE:
MSMg01no374_o11.b1 PHD_FILE: MSMg01no374_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:18 2005
         (638 letters)



>mm_chr19_19218352_19219389
          Length = 1038

 Score = 1195 bits (618), Expect = 0.0
 Identities = 633/638 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagatgtatctggaggatatcatcctgagtgaggtaacccaatcacaaaagaacacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagatgtatctggaggatatcatcctgagtgaggtaacccaatcacaaaagaacacaca 260

                                                                       
Query: 61  tgatatgcactcactgataagtggatattagcccagaaatgtagaatatcaaagatacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatatgcactcactgataagtggatattagcccagaaatgtagaatatcaaagatacaa 320

                                                                       
Query: 121 tttgcaaaacacatgaaactcaagaagaaggaagaccaaagagtggatagttcgttcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgcaaaacacatgaaactcaagaagaaggaagaccaaagagtggatagttcgttcctt 380

                                                                       
Query: 181 cttagaatgtgaaacaaaatacccatggaaggagttacagagacaaagctcagaactgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttagaatgtgaaacaaaatacccatggaaggagttacagagacaaagctcagaactgag 440

                                                                       
Query: 241 atggaaggttatatcatctgttccaggttattatcttcacttggagtcctctgtgtctgt 300
           ||||||||  | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggaaggaaagaccatctgttccaggttattatcttcacttggagtcctctgtgtctgt 500

                                                                       
Query: 301 agaagaaagtgaagaatggattaggtagtttcaagggagctccatggctgacggtacagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaagaaagtgaagaatggattaggtagtttcaagggagctccatggctgacggtacagt 560

                                                                       
Query: 361 tgtgtactctgttcaggctattcgctttgccactatggggatgaaacgctctttagaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgtactctgttcaggctattcgctttgccactatggggatgaaacgctctttagaata 620

                                                                       
Query: 421 aaatgggcattgctaactttgttgccagtttttattagattaactcttaatttaaatttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatgggcattgctaactttgttgccagtttttattagattaactcttaatttaaatttt 680

                                                                       
Query: 481 gataaacttgagaatttcatatacaagtcctgtaattacatcattttcacttcctcctct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gataaacttgagaatttcatatacaagtcctgtaattacatcattttcacttcctcctct 740

                                                                       
Query: 541 ttcccctaacttctccctcctcttcctctttctcacattcatgacctcatcttctttacc 600
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcccctaacttctccctcttcttcctctttctcacattcatgacctcatcttctttacc 800

                                                 
Query: 601 attgccatattaatgcatgcgtacacgtgtgactgcag 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attgccatattaatgcatgcgtacacgtgtgactgcag 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no374_o11.g1 MSMg01no374_o11.g1 CHROMAT_FILE:
MSMg01no374_o11.g1 PHD_FILE: MSMg01no374_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:18 2005
         (583 letters)



>mm_chr19_19384608_19385590
          Length = 983

 Score =  919 bits (475), Expect = 0.0
 Identities = 487/491 (99%)
 Strand = Plus / Minus

                                                                       
Query: 93  atgtgtatgggcattttgccagcgtgtatatctctgggctatactacatgtatgcctggt 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 atgtgtatgggcattttgccagcgtgtatatctctgggctatactacatgtatgcctggt 923

                                                                       
Query: 153 acatgaggaggccagaaaagggtgtcaggcttcctggcattgaagttatagacagttgtg 212
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 acatgaggaggccagaagagggtgtcaggcttcctggcattgaagttatagacagttgtg 863

                                                                       
Query: 213 agctgtcatatgggtgctgagcattgaacttcgggaagaacagccagtgcttgtaagcac 272
           |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 862 agctgtcatatgggtgctgagcattgaacttcgggaagaacagccagttctcgtaagcac 803

                                                                       
Query: 273 tgagccttctcatcagccctgttttagtcagtgttcattggtagtaaataaatggtgact 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tgagccttctcatcagccctgttttagtcagtgttcattggtagtaaataaatggtgact 743

                                                                       
Query: 333 aaaaaccaataattttaacaataattttggcctcaaactaccagtagccatctcactagt 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aaaaaccaataattttaacaataattttggcctcaaactaccagtagccatctcactagt 683

                                                                       
Query: 393 tctggggtctaatctctggcactagtccaagctactgtggcaacatcctagggaaatggg 452
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 682 tctggggtctaatctctggcaccagtccaagctactgtggcaacatcctagggaaatggg 623

                                                                       
Query: 453 aagtttctagattttaaaaagaaaacaaaaattgctttttagcgctcccctgttccctct 512
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aagtttctagattttaaaaagaaaacaaaaattgctttttagcgctcccctgttccctct 563

                                                                       
Query: 513 atacattgcttttaagatattgtaaaaatcttcaaataatgccagaatttaaaagatgta 572
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atacattgcttttaagatattgtaaaaatcttcaaataatgccagaatttaaaagatgta 503

                      
Query: 573 tttttgagagt 583
           |||||||||||
Sbjct: 502 tttttgagagt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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