Query= MSMg01no376_l03.b1 MSMg01no376_l03.b1 CHROMAT_FILE:
MSMg01no376_l03.b1 PHD_FILE: MSMg01no376_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:39 2005
(582 letters)
>mm_chr19_33145218_33146198
Length = 981
Score = 1056 bits (546), Expect = 0.0
Identities = 570/578 (98%), Gaps = 1/578 (0%)
Strand = Plus / Minus
Query: 5 gaattctttttgtgatgccccagtaacaaaggtttttatagtggtactgtttgccaatct 64
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaattctttttgtgatgggccagtaacaaaggtttttatagtggtactgtttgccaatct 722
Query: 65 gacctgggcttgtcagtaaaaatcagacacaatgaaagacgtttgaaggaatgatggttc 124
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 721 gacctgggcttgtcagtaaaaatcagacacaataaaagacgtttgaaggaatgatggttc 662
Query: 125 tcagaatagcaagctcagctaaactgaaccttcatggtctgatctcatcatctttaaaca 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tcggaatagcaagctcagctaaactgaaccttcatggtctgatctcatcatctttaaaca 602
Query: 185 ttcctaaagcatgagctaatcaagatgagccctgaaggacaagggagaatacaaaggtaa 244
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 601 ttcctaaagcatgagctaatcaagatgagccctgaaggacaaaggagaatacaaaggtaa 542
Query: 245 aaggaagaaggacatgccaggttgggattgggcacccaaaggcctgctagccaaaggggc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaggaagaaggacatgccaggttgggattgggcacccaaaggcctgctagccaaaggggc 482
Query: 305 atacagagtctggggagaaattatgaagcaaatactctgtagtgaagagcctgcacagtg 364
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 481 atacagagtctggggagaaattatgaagcaaatactctgtagtgaagag-ctgcacagtg 423
Query: 365 cgttttgtagaccttcagctgagttgtaactcagccatgtgttaactgcaggatcccaac 424
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 422 cgctttgtagaccttcagctgagttgtaactcagccacgtgttaactgcaggatcccaac 363
Query: 425 agagagcttttcctggacctctctgaatctctgcttcagggacaaagaaagaggcatatc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agagagcttttcctggacctctctgaatctctgcttcagggacaaagaaagaggcatatc 303
Query: 485 ataaagaagagacaatgatgcttgtctttcaagatggtacgagaagtggtttagataatt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ataaagaagagacaatgatgcttgtctttcaagatggtacgagaagtggtttagataatt 243
Query: 545 atgttgaacatgcactggtcttagtaagcgattagtag 582
||||||||||||||||||||||||||||||||||||||
Sbjct: 242 atgttgaacatgcactggtcttagtaagcgattagtag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 981
Length adjustment: 10
Effective length of query: 572
Effective length of database: 971
Effective search space: 555412
Effective search space used: 555412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_l03.g1 MSMg01no376_l03.g1 CHROMAT_FILE:
MSMg01no376_l03.g1 PHD_FILE: MSMg01no376_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:39 2005
(303 letters)
>mm_chr19_32960428_32961132
Length = 705
Score = 563 bits (291), Expect = e-165
Identities = 301/305 (98%), Gaps = 2/305 (0%)
Strand = Plus / Plus
Query: 1 cagttgggtgtttctttcatctgattcaaacgtagccctgggccacagatgcagccttat 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 cagttgggtgtttctttcatctgattcaaatgtagccctgggccacagatgcagccttat 260
Query: 61 at--ctgggcaacattgaattctcaataggaagggctgttctcgtaagggggtttgctgt 118
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatctgggcaacattgaattctcaataggaagggctgttctcgtaagggggtttgctgt 320
Query: 119 ctttggagttaaggaatgaagtgttggtgagaagatctgttattatgtgcttttctctcg 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ctttggagttaaggaatgaagtgttggtgagaagatctgttattatgtgcttttctcttg 380
Query: 179 gcagaacacttctaaggggctctgttcctgaaggcggctctgaggctatgccttgggagc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagaacacttctaaggggctctgttcctgaaggcggctctgaggctatgccttgggagc 440
Query: 239 ttgggcgtttgtcttcttggctaccatcttctgaatgtgctagacattctgactcattgc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgggcgtttgtcttcttggctaccatcttctgaatgtgctagacattctgactcattgc 500
Query: 299 actgg 303
|||||
Sbjct: 501 actgg 505
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 705
Length adjustment: 9
Effective length of query: 294
Effective length of database: 696
Effective search space: 204624
Effective search space used: 204624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
