Query= MSMg01no376_m07.b1 MSMg01no376_m07.b1 CHROMAT_FILE:
MSMg01no376_m07.b1 PHD_FILE: MSMg01no376_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:44 2005
(447 letters)
>mm_chr19_32121079_32121925
Length = 847
Score = 810 bits (419), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 1 acggcagggtaaggaaaatggtgatggatggtagtgaaaagaggtcttctggaagagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acggcagggtaaggaaaatggtgatggatggtagtgaaaagaggtcttctggaagagggg 260
Query: 61 ctctgtttggcagatgtttacatgaaaatagagaagctgcttcttttggttataggaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgtttggcagatgtttacatgaaaatagagaagctgcttcttttggttataggaaaa 320
Query: 121 gcatcccagccacagtgaacagacagactgcaaaggcttgatttgcaagatcaaaactcc 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 gcatcccagccacagtgaacagacagactgcaaaggcttgctttgcaagatcaaaactcc 380
Query: 181 tctgttctctgagctggtctataagaaaccacctactgtgtgtgaggccaccccaagaat 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgttctctgagctggtctttaagaaaccacctactgtgtgtgaggccaccccaagaat 440
Query: 241 ctggtggagaactcactgtggaaagaaccatcctgtcagtagtaatatgactggcacatg 300
| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 ccggtggagaactcacggtggaaagaaccatcttgtcagtagtaatatgactggcacatg 500
Query: 301 agtgaggagccatgccactcaggacttaaaaacaaacaaacaaaacaaaacacaccatca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgaggagccatgccactcaggacttaaaaacaaacaaacaaaacaaaacacaccatca 560
Query: 361 tcagaccagatcggaattgctttgagccaccaggatttttaatttcattgttcagcaaca 420
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaaccagatcggaactgctttgagccaccaggatttttaatttcattgttcagcaaca 620
Query: 421 gacaaaggaacttcagtaaatgttcat 447
|||||||||||||||||||||||||||
Sbjct: 621 gacaaaggaacttcagtaaatgttcat 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_m07.g1 MSMg01no376_m07.g1 CHROMAT_FILE:
MSMg01no376_m07.g1 PHD_FILE: MSMg01no376_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:44 2005
(487 letters)
>mm_chr19_32306680_32307576
Length = 897
Score = 857 bits (443), Expect = 0.0
Identities = 480/497 (96%), Gaps = 10/497 (2%)
Strand = Plus / Minus
Query: 1 aagtatctttatagaaaac---aatactgaatgaa----tgccttttagaatgtattttt 53
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 697 aagtatctttatagaaaacaataatactgaatgaatgattgccttttagaatgtattttt 638
Query: 54 aaaactagaaatactgcattttgaggacaac---agagatcaataatagatctagacatt 110
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 637 aaaactagaaatactgcattttgaggacaacagtagagaccaataatagatctagacgtt 578
Query: 111 gtaggcatttttattcccaggtggccaagctaggggtaggtttttgttactattctttct 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gtaggcatttttattcccaggtggccaagctaggggtaggtttttgttactattctttct 518
Query: 171 atgacagagctgtcacatagaacattacaatataagctttgtctgacttaagatagcttg 230
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 517 atgacagagctgtcacatagaacattacaatacaagctttgtctgacttaaggtagcttg 458
Query: 231 ttggatttctcattgtaattcaaaaatgaaatgtgtgaagacgcctggaagcctctgtgc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttggatttctcattgtaattcaaaaatgaaatgtgtgaagacgcctggaagcctctgtgc 398
Query: 291 ctgcagctgcccttgttcctgttgcgtggggaacttcctggcagcctgggtcctgagcat 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctgcagctgcccttgttcctgttgcgtggggaacttcctggcagcctgggtcctgagcat 338
Query: 351 gcgccatgacacttcacactgtgcatgccaccttacacaaatcatgaacccactgctagg 410
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtgccatgacacttcacactgtgcatgccaccttacacaaatcatgaacccactgctagg 278
Query: 411 taacatcccaggagttcattgaaggtggtggaataggagatgtagcccacctgcatgttc 470
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 taacgtcccaggagttcagtgaaggtggtggaataggagatgtagcccacctgcatgttc 218
Query: 471 cttccctaggaaggaga 487
|||||||||||||||||
Sbjct: 217 cttccctaggaaggaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 897
Length adjustment: 10
Effective length of query: 477
Effective length of database: 887
Effective search space: 423099
Effective search space used: 423099
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
