Query= MSMg01no376_o03.b1 MSMg01no376_o03.b1 CHROMAT_FILE:
MSMg01no376_o03.b1 PHD_FILE: MSMg01no376_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:53 2005
(541 letters)
>mm_chr19_58699596_58700536
Length = 941
Score = 1023 bits (529), Expect = 0.0
Identities = 538/541 (99%)
Strand = Plus / Plus
Query: 1 gatcctcttgccaagagattttgtaaatctttacattccggagattgggtaataaaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatcctcttgccaagagattttgtaaatctttacattccggagattgggtaataaaaatg 260
Query: 61 acaggtgtgctttgtgtcatgccttgttgtgtcttttccccccaaaactcatgcttcgat 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 acaggtgtgctttgtgtcatgccttgttgtatcttttccccccaaaactcatgcttcgat 320
Query: 121 tacaatcccagatggagtctttattttatgcatgctttgcctgttactcagcagtgacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaatcccagatggagtctttattttatgcatgctttgcctgttactcagcagtgacta 380
Query: 181 gatcttattccaataaaggatattcaaagtccgtacaagactgagccaaacatttttggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcttattccaataaaggatattcaaagtccgtacaagactgagccaaacatttttggc 440
Query: 241 aatttctttttctttacatggttggagttttgcatttagccttcacatagcgatccattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatttctttttctttacatggttggagttttgcatttagccttcacatagcgatccattt 500
Query: 301 gtctttttcttttgcaggctttaaaaaaaaatctacttatttaataatcagtactaagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctttttcttttgcaggctttaaaaaaaaatctacttatttaataatcagtactaagca 560
Query: 361 tgctaagtaatgaggttctatgaaaacaggatgcgggccctgtgcttggggtccgagact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctaagtaatgaggttctatgaaaacaggatgcgggccctgtgcttggggtccgagact 620
Query: 421 atgactcagatgtagtagaggcagacatggggtgaggggagcgctatcgagaaccagcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgactcagatgtagtagaggcagacatggggtgaggggagcgctatcgagaaccagcca 680
Query: 481 ctacactctcctaaaaccttcaccccgaaaccaatgatcccttagggatgtcatgaatga 540
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 681 ctacactctcctaaaaccttcaccccgaacccactgatcccttagggatgtcatgaatga 740
Query: 541 a 541
|
Sbjct: 741 a 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_o03.g1 MSMg01no376_o03.g1 CHROMAT_FILE:
MSMg01no376_o03.g1 PHD_FILE: MSMg01no376_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:53 2005
(455 letters)
>mm_chr19_58871285_58872141
Length = 857
Score = 764 bits (395), Expect = 0.0
Identities = 436/465 (93%), Gaps = 26/465 (5%)
Strand = Plus / Minus
Query: 1 atcctgatttaaaacactggaagcatgcataatgaatggatggacagacgaatgaatg-- 58
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 766 atcctgatttaaaacactggaagcatgcataatgaatggatggacaggcgaatgaatgga 707
Query: 59 ------gacggacagacagacggatggatgggtggatggatggacggatggatggatgga 112
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 706 tggacagacggacagacagacggatggatggg----------------tggatggatgga 663
Query: 113 cagatacagaatgagggaagggacttcaaatgcaagttggatttgtgaaccatcatcata 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 cagatacagaatgagggaagggacttcaaatgcaagttggatttgtgaaccatcatcata 603
Query: 173 gccaatatgcagatttttaaaaagcattttgaatttcaacctattgtcttcttttccaca 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gccaatatgcagatttttaaaaagcattttgaatttcaacctattgtcttcttttccaca 543
Query: 233 ccgcttgccgcataactccctgccagaatgtg--aaaaaaaaatgctatcaaaccacaga 290
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 542 ccgcttgccgcagaactccctgccagaatgtgaaaaaaaaaaatgctatcaaaccacaga 483
Query: 291 acaagcgaatgggaaccccaaactggacggcagggtctcaaatccagacctcaggatgcc 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 acaagcgaatgggaaccccaaactggacggcagggtctcaaatccagacctcaggatgcc 423
Query: 351 tgctttctaggactcctgcaaaccctgcttcagaagctcatgggtgtttccagccacagt 410
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgctttctaggactcctgctaaccctgcttcagaagctcatgggtgtttccagccacagt 363
Query: 411 cctcaaatagactttcgattttgttataatggatataattttatg 455
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cctcaaatagactttcgattttgttataatggatataattttatg 318
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 857
Length adjustment: 10
Effective length of query: 445
Effective length of database: 847
Effective search space: 376915
Effective search space used: 376915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
