BAC Information

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BAC

Clone NameMSMg01-377M16
Chromosome19 (Build37)
Map Location 20,302,173 - 20,302,664
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042218, LOC100041541
Downstream geneAnxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377M16.T7 (MSMg01no377_m16.b1)MSMg01-377M16.TJ (MSMg01no377_m16.g1)
ACCAG482790AG482791
length775804
length of high quality
(start - end)
498 (71 - 568)119 (76 - 194)
definitionCHROMAT_FILE: MSMg01no377_m16.b1 PHD_FILE: MSMg01no377_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:06 2005CHROMAT_FILE: MSMg01no377_m16.g1 PHD_FILE: MSMg01no377_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCACATTTTCACATTCACAAGTTGAAATATTCTTAAATGGTGTC
TATGCTGATAATGCACATGAGTGTACTTGTCCCTGAGCACCACAACAGTG
GCACTGCATTCATGTTCTATAAGTATCATAAACAAGCTAGAGGGGACTTA
ATTTGGGCTGGGGGACGTGCATAGAGCACACCCACACTATAACATTTTAT
GAAAGACATTGCTGTCTGCATTGAGCCCCAGGAATTACTTTCACAGGCAC
TGTATTAGGAGCAAATTATTTTAAGGAATTGGCTTAGGTGTCTATTATGG
CTCTAACAATAGATAATCAGCAGGGAAGACCAACAGGCAAGAGATGACAG
CAGAGTTCGTGCTCAGGCCAGGGGTAGTATCCAAGCAAAATACCTTTTCT
TGGAGGGAAGAGAGATTACAGGAGATTAGTATTAGTCCTGTTTATACTTC
CCACTGATTGAACAAGTTTTATCCATATTCTGGAAGGCTATTGGATGTAC
TGATTGTCCATCATTTCACAAAGTGACCTCCGCTAAACCCAAGATATATT
CACAGCTACCTTGTAGTGTGTAGTTTTATAAATCAAACCCCCCCCAACCT
GTTTATTCACTGCCCCTGCGGGTCGCTGCCTTCCTCCATCGCCCCCTTGA
AGCTACTCTGCTGTCTACCCCCCCCCATGTCCCCTCCCTTCCTTCCCCCC
ACTTTTTCCTTGGCCCTTTCATCCN
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTATGATTATTTCCTGAGAAATGC
AGTACATAACACTTATTTACTTCACATTTACATCCTGTGATACATTGTAA
CTAAACTAGAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGTGCNCCC
CTCNTCTCCCCCCTTCTTTTTCCCCCCNCCCCCCNNCCCCCTCTTTTTTT
TTCTTCCTCCCCCCTTCNCCCCTTTCTTTTTTCCTCTTTTCCNCNCCCCC
NNNCCCCTTTTTTTTTTTTCNCCCCCCCCCCNTTCCCCNNNNCTTTCCCT
TTTTTTTTCCCCCTCTCTCCCTGCCGTTTCCTCTTTTTTCCCCTCCCTTT
TTTTCCCCCCCCCTCCTCTTTTTTTTCNCCCCTCCCCTTCCTTTTCCTCT
TCCCCTCCCTTCTCTTTTTTTTTTTTCTCTTCTCCCTCCTCTTTCCTCCC
CCCCCCCCCCCTCCCCTCCTTTTTTCTTTCCCCCCCCCCTCTTTTTTTCC
CCTCCTATCCTTTTTTTTCTTTCTTTTTTCTCCCCACCTCTTCCCCCCTT
TTATCTCATACTCCTTTCTATTCCCTCCTTTTTCCTTTTTTATTTTCCCC
CCTCCCTTTTTTTTTTCTCACATCACTTCTATTTTTTCCCCCCCTTCTCT
CTTACTCCCTCCCCTCCCACCCTAATTTATTCCACCTCTTATTCTCCCCT
TCTCCATCTTCATTCCCCTTACTTTTTTCATTCATCCACTCCCCCCTTTC
TTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_m16.b1 MSMg01no377_m16.b1 CHROMAT_FILE:
MSMg01no377_m16.b1 PHD_FILE: MSMg01no377_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:06 2005
         (498 letters)



>mm_chr19_20301973_20302864
          Length = 892

 Score =  882 bits (456), Expect = 0.0
 Identities = 485/498 (97%), Gaps = 6/498 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacaagttgaaatattcttaaatggtgtctatgctgataatgcacatgagtgtacttgt 60
           ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||
Sbjct: 201 tcacaagttgaaatattcttaaatggtg------ctgataatgcacatgagtgtacttgt 254

                                                                       
Query: 61  ccctgagcaccacaacagtggcactgcattcatgttctataagtatcataaacaagctag 120
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 255 ccctgagcaccacaacagtggggctgcattcatgttctataagtatcataaacaagctag 314

                                                                       
Query: 121 aggggacttaatttgggctgggggacgtgcatagagcacacccacactataacattttat 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aggggacttaattagggctgggggacgtgcatagagcacacccacactataacattttat 374

                                                                       
Query: 181 gaaagacattgctgtctgcattgagccccaggaattactttcacaggcactgtattagga 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gaaagactttgctgtctgcattgagccccaggaattactttcacaggcactgtattagga 434

                                                                       
Query: 241 gcaaattattttaaggaattggcttaggtgtctattatggctctaacaatagataatcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gcaaattattttaaggaattggcttaggtgtctattatggctctaacaatagataatcag 494

                                                                       
Query: 301 cagggaagaccaacaggcaagagatgacagcagagttcgtgctcaggccaggggtagtat 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cagggtagaccaacaggcaagagatgacagcagagttcgtgctcaggccaggggtagtat 554

                                                                       
Query: 361 ccaagcaaaataccttttcttggagggaagagagattacaggagattagtattagtcctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ccaagcaaaataccttttcttggagggaagagagattacaggagattagtattagtcctg 614

                                                                       
Query: 421 tttatacttcccactgattgaacaagttttatccatattctggaaggctattggatgtac 480
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 615 tttatacttcccactgattgaacaagttttatccatattctggaaggccattggatgtac 674

                             
Query: 481 tgattgtccatcatttca 498
           |||||| |||||||||||
Sbjct: 675 tgattgcccatcatttca 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 892
Length adjustment: 10
Effective length of query: 488
Effective length of database: 882
Effective search space:   430416
Effective search space used:   430416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)