Query= MSMg01no377_m19.b1 MSMg01no377_m19.b1 CHROMAT_FILE:
MSMg01no377_m19.b1 PHD_FILE: MSMg01no377_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:07 2005
(446 letters)
>mm_chr19_24416190_24417035
Length = 846
Score = 737 bits (381), Expect = 0.0
Identities = 426/441 (96%)
Strand = Plus / Minus
Query: 5 gaattcctggtacttgcctttttctttcctactgagaaatctgttcttcgaaaggagata 64
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 645 gaattcctggtacttgaatttttcttacctactgagaaatctgttcttcgaaaggagata 586
Query: 65 tgaactgagcgccaacaactagaggggcaaatagattttatctccaaactaagagcaatt 124
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 585 tgaactgagtgccaacaactagaggggcaaataggttttatctccaaactaagagcaatt 526
Query: 125 caactgaatgctgtgaaataagttatatacatgactattcattctcgccatgattccctg 184
||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 525 caacttagtgctgtgaaataagttatatacatgactattcattctttccatgattccctg 466
Query: 185 cacagttgggagcaaagctggggctctgtttatgcatacaggttgaaagctcacttcacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cacagttgggagcaaagctggggctctgtttatgcatacaggttgaaagctcacttcacc 406
Query: 245 cccaatgtatctgtgctcccccatcccagaggcccttaccagcatcactgtggtagctag 304
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 405 cccaatgtatctgtgctcccccatcccagaagcccttaccagcatcactgtggtagctag 346
Query: 305 tctcgtgtatttgcccgtgttttcctggtggctctctctaacatctcgcccactattaag 364
|||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 345 tctcatgtatttgtccgtgttttcctggtggctctctctaacatctagcccactattaaa 286
Query: 365 atgtggagttttatgagaagagcagataccataggagaagcaactggccatgctgggagc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 atgtggagttttatgagaagagcagataccataggagaagcaactggccatgctgggagc 226
Query: 425 cagctggtaaaacctttctaa 445
||||||| |||||||||||||
Sbjct: 225 cagctggcaaaacctttctaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_m19.g1 MSMg01no377_m19.g1 CHROMAT_FILE:
MSMg01no377_m19.g1 PHD_FILE: MSMg01no377_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:07 2005
(388 letters)
>mm_chr19_24271317_24272104
Length = 788
Score = 692 bits (358), Expect = 0.0
Identities = 375/388 (96%), Gaps = 12/388 (3%)
Strand = Plus / Plus
Query: 1 aaagcagtgagccctcattcatgggaggagcaggtcactccttaggacaatgtggccagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aaagcagtgagccctcattcatgggaggagcaggtcactccttaggacaatgtggccagt 272
Query: 61 gtcctaacctcaacctcaggcctgcaggaatgttctgctcagaagcaaagagcaaaacca 120
| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 g------------cctcaggcctgcaggaatgttctgctcagaagcaaagagcaaaacca 320
Query: 121 gagggtaactttgtttatgaaggaccagtttgcaacaaatggttttgcatcatttaggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagggtaactttgtttatgaaggaccagtttgcaacaaatggttttgcatcatttaggga 380
Query: 181 gacaaggaccagagaggaaatggttctccatatgagacttattcatgccagttgctagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaaggaccagagaggaaatggttctccatatgagacttattcatgccagttgctagga 440
Query: 241 atctctaaacaaactactaatctgccagtttaggggtgaacaccatcacaagccgcccta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctctaaacaaactactaatctgccagtttaggggtgaacaccatcacaagccgcccta 500
Query: 301 gaccagacagtaaagacatgcagcttgtgtctgaggaccaaaccctctgtaatgatgact 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 gaccagacagtaaagacatgcagcttgtgtctgaggaccaagccctctgtaatgatgact 560
Query: 361 ttaatgaggctatttcacaatctaacaa 388
||||||||||||||||||||||||||||
Sbjct: 561 ttaatgaggctatttcacaatctaacaa 588
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space: 295241
Effective search space used: 295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
