BAC Information

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BAC

Clone NameMSMg01-378C22
Chromosome19 (Build37)
Map Location 24,069,029 - 24,069,522
singlet/doubletsinglet
Overlap geneGm967
Upstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1
Downstream gene1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378C22.T7 (MSMg01no378_c22.b1)MSMg01-378C22.TJ (MSMg01no378_c22.g1)
ACCAG483090AG483091
length1,335774
length of high quality
(start - end)		---500 (77 - 576)
definitionCHROMAT_FILE: MSMg01no378_c22.b1 PHD_FILE: MSMg01no378_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:36 2005CHROMAT_FILE: MSMg01no378_c22.g1 PHD_FILE: MSMg01no378_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCAATGTTATTAATATACGTAATAAAAATAATACATCNTTTCTCTTTGC
AATCGCTCACACGGGCTTGAGCTGTGTTGATCTGTGCTGTGTGGTGTNGG
TGGGTTCTATTCGATAGACAGTGCCATCGCGACGTGTTGNTGGTTTTGTT
GATTATCCGCTGTTTTCACTGCGATAAACCGAGATGGGCCGGAGCCGATT
GGTCGTCTGCGTGTGCGTAGTTTGCTATGAGAAGATCTTCCTTATTTAAC
GGTTATGCGTATGTGCCTGATGGCAGCGCAGCGCGTAGTAGAAATACCGT
AAGCGACGTGCGGCACTATATAGGTGCGCAGATATGTCGCAGAGTGAGGA
AGGAGCGCGCCCCGGTTGTAATTGTAGTGCTGTATATCTCTCTCCCTCTT
TCCATCATCGCTGACGTGTGTAATGCGGAAGAGATTGAGGGGCGAAAAGG
CGCGGAGGCTAGGCGGGAAAATCGGGAGGGAAGAGGACTATGAATGGCTG
GCTGAGCCGGGCATCGGGCTACTAGTGCATCGCGGGGCGAGCGCGGGAGT
TAAATTACGGAGCGCGACACACAAACGCTTCAGTCACAAAAGTGAGTGAG
AGAGAGCCGCCTATAGTATCGATATGAGAATATAGTAGAAATGGGGGCGA
TATTGGTAGGTGAGTGTTCGCGACATATAATGATGACGGATAGTGTGTCA
TACAGTTATAGACGACAATATCGCGCTTTATTATATGACCCTTATATTAA
CCACGAGCATAAGATATGCCGTATGGCTAGTCGCGAGTAATATATAGAAG
AACCACGTGCGCCAGAGGGTAAGCGAGTTAATTGGGGTGCAATAGTTGGC
GCTGTGGGCGCGTATGTTTAATCACGCGGTTATGATCGCGTTGTNTAATC
ATGGTGTGCGGGACGGGAGAATATCAACGTCTCTCGCGGAGGGTGAGGCA
ATGCAGAGGATCGTAAGATACTATTCGCGCGCGCGGAGTCGCGTGCTCAT
TAGTATTATCTTTACCCGTCCGGGTTGTTTGCGGGCTGAAGATATAAAAC
GGCAACACGGTGCAAGTGATCTGGTGTATAGAAGAACTCCGCCGGACTTG
TTTCGTGTGTGGTGTAGTGGGCGTGTTCTGCGTATCCTCGCGACGGCATA
TACCTAGCGAGCCGTTTTATATCGCAGTTACAACCGCGTATGACGAATAG
TATAACAGGTATAGCAGACAGTAATAAGCAACAGCGACGTGCGCGAGAAG
CATGGAGCGCGAAACGAATTATGGTTACGCGTACTAGCGATACAAATTTA
TAACATATCGCCTCCCTGAGCGCATACTTAAGCGG

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGTGACCTGGATTCTTTGTTCTT
TAGAAGCAGGCAGGCCCATCCATCGATCATGGAGACCTGACCCATCCATC
CCCTAACCAGGAGCTGCACTGCACTGCTCTGGTGCTGGTACGGTATTGGC
CACTTGGTACTCTGGCCAAATGACTGACAACTGAGGAAGATAGCAGCATC
TTCTCTTTGCTTACTTTCTCCACATCCTTTTAGGTCAGGGCACAACAGCA
AGGCCACGGGGAGCTTACCAGATCACATCTGGGCACGCTGGACACAAACT
GGGCTCCTTGACAGCCTAGGATGAAGCCTGCGAGATTTAGGAGGATGCAA
ACCACAGAGAGCAGCACAAAGAGATTCACCTGCAACGAGAGAATGGGAGC
TTAGGAAGAAGCTGAACGTGCGGATGGCTTCGCGTGCAGATACGGATTCA
ATGCATACATTTAAGCCACACATTATCTTCCAGGAGGAAACTTTAAGGAA
AAAGTAAAAAAAAAAAAAAAAATCAAAAGTGAAAACGTTAAGGAACAAAG
TAGGGGCTGGAAAGATGACTCCGAGGTTGAGAGCACTGGCTATTCTTCTA
GAAGGCCTGAGTTCAATTCCCAGCAAACACCTGGTAGCTCACAACCATCT
ATAATGGGGATCTGTTGTCCTTTTTTATGGTGGAGAAATTCCTGCTAATA
ACAAATTTGTCCCCTGGATTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_c22.g1 MSMg01no378_c22.g1 CHROMAT_FILE:
MSMg01no378_c22.g1 PHD_FILE: MSMg01no378_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:37 2005
         (500 letters)



>mm_chr19_24068829_24069728
          Length = 900

 Score =  839 bits (434), Expect = 0.0
 Identities = 479/494 (96%), Gaps = 1/494 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtgacctggattctttgttctttagaagcaggcaggcccatccatcgatcatggagac 60
           ||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 201 tggtgacctagattctttgttctttagaagcagaaaggcccatccatcgatcatggagac 260

                                                                       
Query: 61  ctgacccatccatcccctaaccaggagctgcactgcactgctctggtgctggtacggtat 120
           ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 261 ctgacccatccatcccctaaccaggagctgcaccgcactgctctggtgctggcacggtat 320

                                                                       
Query: 121 tggccacttggtactctggccaaatgactgacaactgaggaagatagcagcatcttctct 180
           |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tggccacttgctactctggccaaatgactgacaactgaggaagatagcaacatcttctct 380

                                                                       
Query: 181 ttgcttactttctccacatccttttaggtcagggcacaacagcaaggccacggggagctt 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcttactttctccacgtccttttaggtcagggcacaacagcaaggccacggggagctt 440

                                                                       
Query: 241 accagatcacatctgggcacgctggacacaaactgggctccttgacagcctaggatgaag 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accagatcacacctgggcacgctggacacaaactgggctccttgacagcctaggatgaag 500

                                                                       
Query: 301 cctgcgagatttaggaggatgcaaaccacagagagcagcacaaagagattcacctgcaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgcgagatttaggaggatgcaaaccacagagagcagcacaaagagattcacctgcaac 560

                                                                       
Query: 361 gagagaatgggagcttaggaagaagctgaacgtgcggatggcttcgcgtgcagatacgga 420
           ||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 561 gagagaatgggtgcttaggaagaagctgaacgtgcggatggcgtcacgtgcagatacgga 620

                                                                       
Query: 421 ttcaatgcatacatttaagccacacattatcttccaggaggaaactttaaggaaaaagta 480
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcaatatatacatttaagccacacattatcttccaggaggaaactttaaggaaaaagta 680

                         
Query: 481 a-aaaaaaaaaaaa 493
           | ||||||||||||
Sbjct: 681 ataaaaaaaaaaaa 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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