Query= MSMg01no379_d17.b1 MSMg01no379_d17.b1 CHROMAT_FILE:
MSMg01no379_d17.b1 PHD_FILE: MSMg01no379_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:56 2005
(497 letters)
>mm_chr19_37439548_37440444
Length = 897
Score = 822 bits (425), Expect = 0.0
Identities = 439/447 (98%), Gaps = 7/447 (1%)
Strand = Plus / Minus
Query: 51 gcatagtggaatcccagcattcaagaggctaaagcaagaaagtcacaaacttgagacaac 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 gcatagtggaatcccagcattcaagaggctaaagcaagaaagtcacaaacttgagacaac 838
Query: 111 atagtgcaatcacatttaaaaaaaaaaaaatggggaggcagaggcaagcatatctctgtg 170
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 atagtgcaatcacattt--aaaaaaaaaaatggggaggcagaggcaagcatatctctgtg 780
Query: 171 agttcaaggtcagcctggtctgcatagcaagttctaggtcagccactgtctccaaagaaa 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 agttcaaggtcagcctggtctgcatagcaagttctaggtcagccactgtctccaaagaaa 720
Query: 231 caaaacaaaacaaaacaaaacttttttaatgttggcatgggtgttttatctccttacatt 290
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 719 caaaacaaaacaaaacaaaac-----aaatgttggcatgggtgttttatctccttacatt 665
Query: 291 ttcatataattgtttataaaacatttgtcatgacttattgattctgagccctcttttaac 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttcatataattgtttataaaacatttgtcatgacttattgattctgagccctcttttaac 605
Query: 351 acacaggctcctccatctcttcttcatattgcaatgtatttatcagaggtccgatcttag 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 acacaggctcctccatctcttcttcatattgcaatgtatttatcagaggtccgatcttag 545
Query: 411 ccaagcatggtggcatgtgtctgtaattttagcacttagggccactgtttagaggacagc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ccaagcatggtggcatgtgtctgtaattttagcacttagggccactgtttagaggacagc 485
Query: 471 ctaggattacctaacaagacccgattt 497
|||||||||||||||||||||||||||
Sbjct: 484 ctaggattacctaacaagacccgattt 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_d17.g1 MSMg01no379_d17.g1 CHROMAT_FILE:
MSMg01no379_d17.g1 PHD_FILE: MSMg01no379_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:56 2005
(416 letters)
>mm_chr19_37293610_37294425
Length = 816
Score = 789 bits (408), Expect = 0.0
Identities = 414/416 (99%)
Strand = Plus / Plus
Query: 1 ctttttgtacagtgcccgttgttccctcgatggtctcgtagattcagatgttatgtagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttttgtacagtgcccgttgttccctcgatggtctcgtagattcagatgttatgtagcc 260
Query: 61 agaggacacctctgtttcttgaacagtctagagaacatacagtgggggcctttcctcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggacacctctgtttcttgaacagtctagagaacatacagtgggggcctttcctcttt 320
Query: 121 ccctttgtgtttgtcattgtggctggttactggaagatggctcccgcactgaagagcagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctttgtgtttgtcattgtggctggttactggaagatggctcccgcactgaagagcagt 380
Query: 181 gtgtgcctttaatcccaggagttggaaggcaaaagcaggtacatctctttgagtttgggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgcctttaatcccaggagttggaaggcaaaagcaggtacatctctttgagtttgggg 440
Query: 241 ccatcctgatctatatgatgagttccagaccatccagggctacacagtgagaccctatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatcctgatctatatgatgagttccagaccatccagggctacacagtgagaccctatct 500
Query: 301 caaaatgttaagtaacaacaaaactcaactgtcccttcacgactctgttgagatatcatc 360
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 caaaaagttaagtaacaacaaaactcaactgtcccttcacaactctgttgagatatcatc 560
Query: 361 agtgcatttttgtaaagttcttttatcccacataaaattaaacagcttgcagattt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgcatttttgtaaagttcttttatcccacataaaattaaacagcttgcagattt 616
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space: 328449
Effective search space used: 328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
